Variant report

Variant	rs7235364
Chromosome Location	chr18:13419948-13419949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13412861..13415349-chr18:13419308..13422616,3	MCF-7	breast:
2	chr18:13414771..13422336-chr18:13423598..13429439,14	MCF-7	breast:
3	chr18:13418431..13421204-chr18:13433826..13436759,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM210A-8	chr18:13419420-13421207	ENSG00000267690.1
2	lnc-FAM210A-8	chr18:13419498-13421207	NR_040031

Variant related genes	Relation type
ENSG00000267690	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11080643	1.00[CEU][hapmap]
rs11873077	1.00[CEU][hapmap]
rs11875421	1.00[CEU][hapmap]
rs11877708	1.00[CEU][hapmap]
rs12456449	1.00[CEU][hapmap]
rs16940477	1.00[CEU][hapmap]
rs1961389	1.00[CEU][hapmap]
rs7233930	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085540	1.00[CEU][hapmap]
rs8085978	1.00[CEU][hapmap]
rs9945445	1.00[CEU][hapmap]
rs9960178	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13383600-13421200	Weak transcription	Gastric	stomach
2	chr18:13385600-13420800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr18:13390400-13425600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:13395000-13426600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr18:13403400-13426400	Weak transcription	Brain Hippocampus Middle	brain
6	chr18:13407600-13427400	Weak transcription	Brain Substantia Nigra	brain
7	chr18:13411800-13422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:13413200-13421000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr18:13413200-13421400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr18:13413200-13424400	Weak transcription	Fetal Brain Female	brain
11	chr18:13414800-13420800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr18:13415000-13422400	Enhancers	Fetal Heart	heart
13	chr18:13416000-13420800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr18:13416200-13420800	Weak transcription	Spleen	Spleen
15	chr18:13416400-13420600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr18:13416400-13420600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr18:13416600-13421000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr18:13416600-13421200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr18:13416600-13421200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr18:13417200-13420600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr18:13417200-13420600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr18:13417200-13421200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr18:13417200-13421200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr18:13417200-13427600	Weak transcription	Colon Smooth Muscle	Colon
25	chr18:13417200-13439400	Weak transcription	Fetal Stomach	stomach
26	chr18:13417200-13447200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr18:13417400-13420000	Weak transcription	Primary T cells from cord blood	blood
28	chr18:13417400-13420800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr18:13417400-13422200	Weak transcription	Dnd41	blood
30	chr18:13417400-13426600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr18:13418200-13421000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr18:13418200-13421200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr18:13418200-13426800	Genic enhancers	Fetal Thymus	thymus
34	chr18:13418400-13420600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr18:13418400-13422200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr18:13418400-13432000	Weak transcription	Pancreas	Pancrea
37	chr18:13418400-13452200	Weak transcription	Colonic Mucosa	Colon
38	chr18:13418600-13420000	Enhancers	Liver	Liver
39	chr18:13418600-13420000	Weak transcription	Brain Anterior Caudate	brain
40	chr18:13418600-13420400	Weak transcription	Right Ventricle	heart
41	chr18:13418600-13420400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr18:13418600-13420600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr18:13418600-13420800	Weak transcription	Lung	lung
44	chr18:13418600-13422400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr18:13418600-13422800	Weak transcription	Aorta	Aorta
46	chr18:13418600-13425400	Weak transcription	Psoas Muscle	Psoas
47	chr18:13418600-13427200	Weak transcription	Fetal Muscle Leg	muscle
48	chr18:13418800-13420800	Weak transcription	Right Atrium	heart
49	chr18:13418800-13420800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr18:13418800-13424600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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