Variant report

Variant	rs7236611
Chromosome Location	chr18:40125717-40125718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1346987	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16976281	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1864727	0.98[ASN][1000 genomes]
rs4340404	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57398776	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7231412	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7237672	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7237867	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8086170	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40124600-40126000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr18:40124600-40126000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr18:40124800-40125800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr18:40124800-40126000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr18:40125000-40126200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:40125200-40126400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr18:40125400-40126000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr18:40125600-40126000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr18:40125600-40126000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr18:40125600-40126000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr18:40125600-40126000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr18:40125600-40126200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr18:40125600-40126200	Enhancers	HMEC	breast
14	chr18:40125600-40126200	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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