Variant report

Variant	rs7238724
Chromosome Location	chr18:43539671-43539672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10432160	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10432197	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11082498	0.84[AFR][1000 genomes]
rs3745000	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4629066	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs475452	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs481755	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584397	0.91[EUR][1000 genomes]
rs630625	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7226881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7230104	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7231179	0.89[AMR][1000 genomes]
rs7231317	0.86[AMR][1000 genomes]
rs7237861	0.90[ASN][1000 genomes]
rs7242733	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72918390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8088153	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8093119	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8098175	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9948634	0.88[AMR][1000 genomes]
rs9959763	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9964220	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9964347	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909588	chr18:43474795-43554371	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43492400-43546600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:43494000-43546600	Weak transcription	Stomach Mucosa	stomach
3	chr18:43519200-43546600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:43528600-43540000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr18:43529000-43546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr18:43534200-43545600	Weak transcription	Fetal Brain Male	brain
7	chr18:43534400-43540800	Weak transcription	Fetal Heart	heart
8	chr18:43534600-43546600	Weak transcription	Gastric	stomach
9	chr18:43535000-43546400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr18:43535000-43546400	Weak transcription	GM12878-XiMat	blood
11	chr18:43535200-43540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr18:43535200-43540200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr18:43535200-43540200	Weak transcription	Thymus	Thymus
14	chr18:43535200-43541000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr18:43535200-43541000	Weak transcription	Aorta	Aorta
16	chr18:43535200-43541000	Weak transcription	Esophagus	oesophagus
17	chr18:43535200-43541000	Weak transcription	Lung	lung
18	chr18:43535200-43542000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr18:43535200-43542000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr18:43535200-43542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr18:43535200-43542200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr18:43535200-43542400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr18:43535200-43542600	Weak transcription	K562	blood
24	chr18:43535200-43543000	Weak transcription	Right Ventricle	heart
25	chr18:43535200-43543200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr18:43535200-43545200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr18:43535200-43545200	Weak transcription	Brain Hippocampus Middle	brain
28	chr18:43535200-43545200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr18:43535200-43545400	Weak transcription	Brain Angular Gyrus	brain
30	chr18:43535200-43545600	Weak transcription	Brain Germinal Matrix	brain
31	chr18:43535200-43545600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr18:43535200-43545600	Weak transcription	Small Intestine	intestine
33	chr18:43535200-43546000	Weak transcription	Fetal Intestine Small	intestine
34	chr18:43535200-43546200	Weak transcription	HUVEC	blood vessel
35	chr18:43535200-43546400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr18:43535200-43546400	Weak transcription	Colon Smooth Muscle	Colon
37	chr18:43535200-43546400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr18:43535200-43546400	Weak transcription	Fetal Stomach	stomach
39	chr18:43535200-43546400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr18:43535200-43546600	Weak transcription	Spleen	Spleen
41	chr18:43535400-43541000	Weak transcription	Adipose Nuclei	Adipose
42	chr18:43535400-43542000	Weak transcription	Fetal Muscle Leg	muscle
43	chr18:43535400-43545000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr18:43535400-43545600	Weak transcription	Hela-S3	cervix
45	chr18:43535400-43545800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr18:43535400-43546200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr18:43535400-43546400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr18:43535400-43546400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr18:43535400-43546400	Weak transcription	Brain Anterior Caudate	brain
50	chr18:43535400-43546400	Weak transcription	Brain Cingulate Gyrus	brain

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