Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12454233	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12454949	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12455088	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12455889	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12456108	0.82[EUR][1000 genomes]
rs12456441	0.89[ASN][1000 genomes]
rs12457859	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12457882	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1420939	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1420942	0.81[EUR][1000 genomes]
rs16943913	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16943917	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35009762	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55771410	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6508496	0.85[ASN][1000 genomes]
rs7236484	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72889093	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72889097	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72890815	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8090732	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv962948	chr18:25241568-25248773	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25240200-25249200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25245000-25248800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:25245200-25249200	Enhancers	Osteobl	bone
4	chr18:25245400-25249200	Enhancers	Fetal Heart	heart
5	chr18:25245600-25248000	Weak transcription	NH-A	brain
6	chr18:25246000-25249000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:25246800-25248000	Weak transcription	HSMMtube	muscle
8	chr18:25246800-25248800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:25247600-25249200	Weak transcription	Fetal Intestine Large	intestine
10	chr18:25247600-25249200	Weak transcription	Fetal Intestine Small	intestine
11	chr18:25247800-25248000	Enhancers	HSMM	muscle
12	chr18:25247800-25248400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:25247800-25248800	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search: