Variant report

Variant	rs7239815
Chromosome Location	chr18:39185931-39185932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10502773	1.00[ASN][1000 genomes]
rs11876486	0.83[ASN][1000 genomes]
rs11877516	0.83[ASN][1000 genomes]
rs11877563	0.83[ASN][1000 genomes]
rs11877634	0.83[ASN][1000 genomes]
rs1368834	0.83[ASN][1000 genomes]
rs1433927	1.00[ASN][1000 genomes]
rs16975029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16975044	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16975046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16975098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16975121	1.00[ASN][1000 genomes]
rs16975136	1.00[ASN][1000 genomes]
rs16975177	0.83[ASN][1000 genomes]
rs16975178	0.83[ASN][1000 genomes]
rs16975193	0.83[ASN][1000 genomes]
rs16975195	0.83[ASN][1000 genomes]
rs16975198	0.83[ASN][1000 genomes]
rs16975205	0.83[ASN][1000 genomes]
rs16975215	0.83[ASN][1000 genomes]
rs16975217	0.83[ASN][1000 genomes]
rs2315173	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35109437	1.00[ASN][1000 genomes]
rs35647859	1.00[ASN][1000 genomes]
rs57258988	0.83[ASN][1000 genomes]
rs6507427	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6507430	0.83[ASN][1000 genomes]
rs6507431	0.83[ASN][1000 genomes]
rs6650668	0.83[ASN][1000 genomes]
rs7226510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7240728	1.00[AMR][1000 genomes]
rs7242858	0.83[ASN][1000 genomes]
rs72907819	0.91[ASN][1000 genomes]
rs72907830	0.91[ASN][1000 genomes]
rs72907836	0.91[ASN][1000 genomes]
rs734169	0.83[ASN][1000 genomes]
rs73450790	1.00[ASN][1000 genomes]
rs73456734	0.83[ASN][1000 genomes]
rs767719	0.91[ASN][1000 genomes]
rs8083506	0.83[ASN][1000 genomes]
rs8083650	0.83[ASN][1000 genomes]
rs8084213	0.83[ASN][1000 genomes]
rs8085338	0.83[ASN][1000 genomes]
rs8089279	0.83[ASN][1000 genomes]
rs8099746	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv2754126	chr18:39183202-39194702	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39174800-39190400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:39182600-39204400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:39184000-39186200	Enhancers	Fetal Heart	heart
4	chr18:39185000-39209600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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