Variant report

Variant	rs7240063
Chromosome Location	chr18:11744937-11744938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11876903	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4556858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6505672	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7233070	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8085982	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8097608	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11743000-11746000	Weak transcription	Fetal Brain Female	brain
2	chr18:11743000-11747400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr18:11743000-11749600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:11743200-11749600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:11744200-11747600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:11744800-11745000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:11744800-11745800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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