Variant report

Variant	rs7240342
Chromosome Location	chr18:8940215-8940216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8937660..8940609-chr18:8949804..8952310,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10163592	0.84[ASN][1000 genomes]
rs12954389	0.90[ASN][1000 genomes]
rs12955151	0.90[ASN][1000 genomes]
rs36028116	0.87[ASN][1000 genomes]
rs59218798	1.00[ASN][1000 genomes]
rs7229415	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7244653	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7244944	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3435152	chr18:8940157-8940509	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8929200-8942800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:8934200-8943200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr18:8936200-8940800	Enhancers	K562	blood
4	chr18:8937600-8942000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr18:8937600-8942000	Weak transcription	NH-A	brain
6	chr18:8937600-8942000	Weak transcription	NHLF	lung
7	chr18:8937600-8942800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr18:8937600-8948000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:8937800-8941800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr18:8937800-8941800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr18:8938000-8940600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:8938000-8941800	Weak transcription	NHDF-Ad	bronchial
13	chr18:8938000-8942000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr18:8938200-8942000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr18:8938200-8943600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr18:8938200-8943600	Weak transcription	HMEC	breast
17	chr18:8938800-8942000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr18:8938800-8943400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr18:8939000-8942000	Weak transcription	Fetal Kidney	kidney
20	chr18:8939000-8943800	Weak transcription	NHEK	skin
21	chr18:8939000-8945000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr18:8939000-8945800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr18:8939200-8940600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr18:8939200-8941200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr18:8939200-8943000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr18:8939200-8943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr18:8939200-8943200	Weak transcription	HSMMtube	muscle
28	chr18:8939200-8944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr18:8939400-8942000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr18:8939400-8942000	Weak transcription	HSMM	muscle
31	chr18:8939400-8944200	Weak transcription	Primary B cells from cord blood	blood
32	chr18:8939600-8940400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr18:8939600-8942000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr18:8939600-8942200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr18:8939600-8943800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr18:8939600-8945000	Weak transcription	Fetal Thymus	thymus
37	chr18:8939800-8942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr18:8940000-8942200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr18:8940000-8944800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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