Variant report

Variant	rs7243852
Chromosome Location	chr18:25763595-25763596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11564340	0.85[ASN][1000 genomes]
rs17495514	0.82[ASN][1000 genomes]
rs17537079	0.82[ASN][1000 genomes]
rs2191635	0.82[ASN][1000 genomes]
rs34738719	0.83[ASN][1000 genomes]
rs9960183	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25758600-25763800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:25758800-25763600	Weak transcription	Liver	Liver
3	chr18:25758800-25763600	Weak transcription	HepG2	liver
4	chr18:25758800-25763600	Weak transcription	HSMMtube	muscle
5	chr18:25759000-25763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr18:25759000-25763600	Weak transcription	HUVEC	blood vessel
7	chr18:25759000-25766000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr18:25759200-25763600	Weak transcription	Right Ventricle	heart
9	chr18:25759200-25765800	Weak transcription	Right Atrium	heart
10	chr18:25759200-25778000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr18:25759400-25763800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr18:25760400-25763600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr18:25761000-25764000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr18:25761600-25763800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr18:25762200-25765600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:25762400-25763600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:25762400-25764200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr18:25762600-25763600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr18:25762600-25763600	Enhancers	Osteobl	bone
20	chr18:25762600-25763800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr18:25762600-25766400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr18:25763000-25763600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr18:25763200-25764200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr18:25763200-25764200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr18:25763200-25764200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr18:25763400-25763800	Enhancers	H9 Cell Line	embryonic stem cell
27	chr18:25763400-25764000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr18:25763400-25764000	Flanking Active TSS	A549	lung
29	chr18:25763400-25764200	Enhancers	NH-A	brain

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