Variant report

Variant	rs7244488
Chromosome Location	chr18:44930990-44930991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12606840	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6507729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801141	chr18:44908270-44955409	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44930000-44931200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:44930000-44932800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:44930000-44932800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:44930400-44931800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:44930400-44931800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:44930400-44932000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr18:44930800-44931000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:44930800-44931200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr18:44930800-44931600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr18:44930800-44931800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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