Variant report

Variant	rs7244665
Chromosome Location	chr18:40375801-40375802
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11872616	0.85[AMR][1000 genomes]
rs11873248	0.85[AMR][1000 genomes]
rs11876135	0.85[AMR][1000 genomes]
rs1626483	0.83[AMR][1000 genomes]
rs1943177	0.83[AMR][1000 genomes]
rs1943178	0.83[AMR][1000 genomes]
rs1943179	0.83[AMR][1000 genomes]
rs28447520	0.85[AMR][1000 genomes]
rs476407	0.81[AMR][1000 genomes]
rs485404	0.81[AMR][1000 genomes]
rs488182	0.83[AMR][1000 genomes]
rs587697	0.82[AMR][1000 genomes]
rs589041	0.83[AMR][1000 genomes]
rs594272	0.81[AMR][1000 genomes]
rs604330	0.81[AMR][1000 genomes]
rs606128	0.83[AMR][1000 genomes]
rs60827299	0.85[AMR][1000 genomes]
rs621000	0.82[AMR][1000 genomes]
rs633351	0.83[AMR][1000 genomes]
rs6507502	0.85[AMR][1000 genomes]
rs7238151	0.84[AMR][1000 genomes]
rs7238693	0.85[AMR][1000 genomes]
rs7239233	0.85[AMR][1000 genomes]
rs8098030	0.85[AMR][1000 genomes]
rs8098429	0.83[AMR][1000 genomes]
rs8099760	0.85[AMR][1000 genomes]
rs9946696	0.85[AMR][1000 genomes]
rs9947110	0.85[AMR][1000 genomes]
rs9947132	0.85[AMR][1000 genomes]
rs9967226	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40374200-40378600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr18:40374800-40378800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links