Variant report

Variant	rs7245082
Chromosome Location	chr18:9734536-9734537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9729801..9734726-chr18:9735904..9739407,5	K562	blood:
2	chr18:9705049..9708161-chr18:9732147..9734824,4	K562	blood:
3	chr18:9733101..9737818-chr18:9912631..9916013,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101558	Chromatin interaction
ENSG00000272799	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11081496	0.80[ASN][1000 genomes]
rs2045228	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1064807	chr18:9695356-9770358	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9720000-9737400	Weak transcription	Brain Anterior Caudate	brain
2	chr18:9720000-9742000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:9720800-9737600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr18:9721000-9741600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:9721200-9737200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr18:9721800-9737600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:9724000-9737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr18:9725000-9737600	Weak transcription	Brain Hippocampus Middle	brain
9	chr18:9731400-9737200	Weak transcription	HSMM	muscle
10	chr18:9731600-9736400	Weak transcription	HMEC	breast
11	chr18:9732000-9735800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr18:9732000-9736000	Strong transcription	Fetal Stomach	stomach
13	chr18:9732000-9736200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr18:9732000-9736600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr18:9732000-9737000	Weak transcription	NH-A	brain
16	chr18:9732200-9736200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr18:9732200-9736400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr18:9732200-9736400	Weak transcription	NHDF-Ad	bronchial
19	chr18:9732600-9741600	Weak transcription	Ovary	ovary
20	chr18:9732800-9734600	Genic enhancers	K562	blood
21	chr18:9732800-9736200	Enhancers	Fetal Thymus	thymus
22	chr18:9732800-9740800	Weak transcription	Adipose Nuclei	Adipose
23	chr18:9732800-9741600	Weak transcription	Colon Smooth Muscle	Colon
24	chr18:9733000-9736000	Genic enhancers	Primary monocytes fromperipheralblood	blood
25	chr18:9733000-9742000	Weak transcription	Aorta	Aorta
26	chr18:9733000-9743600	Weak transcription	Gastric	stomach
27	chr18:9733200-9734600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr18:9733200-9734800	Enhancers	A549	lung
29	chr18:9733200-9735000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr18:9733200-9737200	Weak transcription	Brain Substantia Nigra	brain
31	chr18:9733400-9734800	Enhancers	Primary hematopoietic stem cells	blood
32	chr18:9733400-9735600	Enhancers	Fetal Intestine Large	intestine
33	chr18:9733400-9735800	Genic enhancers	Fetal Intestine Small	intestine
34	chr18:9733400-9736200	Enhancers	Primary B cells from cord blood	blood
35	chr18:9733400-9736800	Weak transcription	Osteobl	bone
36	chr18:9733600-9734600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:9733600-9734600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr18:9733600-9734600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr18:9733600-9734600	Enhancers	Esophagus	oesophagus
40	chr18:9733600-9734600	Enhancers	Fetal Muscle Trunk	muscle
41	chr18:9733600-9734800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr18:9733600-9735000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr18:9733600-9735000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr18:9733600-9735000	Enhancers	Placenta	Placenta
45	chr18:9733600-9735600	Enhancers	Duodenum Mucosa	Duodenum
46	chr18:9733600-9735600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr18:9733600-9735600	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr18:9733600-9735800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr18:9733600-9736800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr18:9733600-9737000	Weak transcription	Right Ventricle	heart

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