Variant report

Variant	rs7245607
Chromosome Location	chr19:37834884-37834885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11880073	1.00[EUR][1000 genomes]
rs11882550	1.00[EUR][1000 genomes]
rs1234249	1.00[EUR][1000 genomes]
rs1234253	1.00[EUR][1000 genomes]
rs55880052	1.00[EUR][1000 genomes]
rs73930940	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37826200-37853200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37826400-37835200	Weak transcription	Aorta	Aorta
3	chr19:37826400-37837800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr19:37826400-37838200	Weak transcription	HUVEC	blood vessel
5	chr19:37826600-37835600	Weak transcription	Osteobl	bone
6	chr19:37826600-37838000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:37826600-37848800	Weak transcription	Small Intestine	intestine
8	chr19:37826600-37856200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:37826600-37861600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr19:37826800-37835000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr19:37826800-37836200	Weak transcription	Gastric	stomach
12	chr19:37826800-37838000	Weak transcription	Psoas Muscle	Psoas
13	chr19:37826800-37846600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr19:37826800-37847000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr19:37826800-37852600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:37826800-37853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr19:37827000-37835200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:37827000-37835200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr19:37827000-37835400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:37827000-37837000	Weak transcription	Colon Smooth Muscle	Colon
21	chr19:37827000-37837000	Weak transcription	NHLF	lung
22	chr19:37827000-37838000	Weak transcription	Pancreas	Pancrea
23	chr19:37827000-37838400	Weak transcription	Hela-S3	cervix
24	chr19:37827000-37845800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr19:37827000-37853400	Weak transcription	Stomach Mucosa	stomach
26	chr19:37827200-37837200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr19:37827200-37838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr19:37828000-37855800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr19:37828200-37838200	Weak transcription	Fetal Brain Male	brain
30	chr19:37828400-37838000	Weak transcription	Right Atrium	heart
31	chr19:37830000-37835000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr19:37830000-37835200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr19:37830000-37835800	Weak transcription	Brain Substantia Nigra	brain
34	chr19:37830000-37846800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr19:37830000-37853600	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr19:37830800-37853200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr19:37831200-37836400	ZNF genes & repeats	A549	lung
38	chr19:37831800-37835000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr19:37831800-37840400	Strong transcription	Ovary	ovary
40	chr19:37831800-37840600	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr19:37831800-37842000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr19:37831800-37846400	Strong transcription	Dnd41	blood
43	chr19:37832000-37842000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr19:37832200-37840600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr19:37832200-37840800	Strong transcription	Primary T cells from cord blood	blood
46	chr19:37832200-37842000	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr19:37832400-37836000	Weak transcription	Fetal Heart	heart
48	chr19:37832600-37835600	Weak transcription	NHDF-Ad	bronchial
49	chr19:37832600-37838800	Weak transcription	HepG2	liver
50	chr19:37832600-37843200	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links