Variant report
| Variant | rs7245864 |
|---|---|
| Chromosome Location | chr19:38305660-38305661 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10401281 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10402530 | 0.84[ASN][1000 genomes] |
| rs10420595 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10420891 | 0.84[ASN][1000 genomes] |
| rs11878269 | 0.85[ASN][1000 genomes] |
| rs11879180 | 0.84[ASN][1000 genomes] |
| rs12975057 | 0.84[ASN][1000 genomes] |
| rs2068431 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2075281 | 0.85[ASN][1000 genomes] |
| rs2075283 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2305105 | 0.85[EUR][1000 genomes] |
| rs3848625 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3848626 | 0.82[ASN][1000 genomes] |
| rs3910952 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4802135 | 0.84[ASN][1000 genomes] |
| rs4803524 | 0.85[ASN][1000 genomes] |
| rs4803525 | 0.85[EUR][1000 genomes] |
| rs4803528 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs58449039 | 0.84[ASN][1000 genomes] |
| rs8101752 | 0.82[ASN][1000 genomes] |
| rs8101858 | 0.81[ASN][1000 genomes] |
| rs8102579 | 0.84[ASN][1000 genomes] |
| rs8104076 | 0.85[ASN][1000 genomes] |
| rs8108245 | 0.85[EUR][1000 genomes] |
| rs8182498 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949296 | chr19:38034722-38763140 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv833820 | chr19:38190721-38414049 | Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 3 | nsv1057428 | chr19:38282158-38320814 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1062040 | chr19:38294465-38370456 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:38304200-38307400 | Weak transcription | Ovary | ovary |
| 2 | chr19:38304200-38307600 | Weak transcription | Aorta | Aorta |
