Variant report

Variant	rs724651
Chromosome Location	chr6:25033975-25033976
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25032692..25035035-chr6:25036206..25038734,3	K562	blood:
2	chr6:25025835..25027765-chr6:25032944..25034504,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6456645	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6930521	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7743187	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767457	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1030634	chr6:24938277-25040161	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs724651	CMAH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25011200-25035600	Weak transcription	Spleen	Spleen
2	chr6:25028200-25034600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:25028200-25035600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:25028200-25037600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:25028600-25034400	Weak transcription	Fetal Thymus	thymus
6	chr6:25028600-25034600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:25029600-25034600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:25032200-25034600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:25032200-25034600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:25032400-25034600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:25032800-25034400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:25032800-25034600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:25032800-25034600	Weak transcription	Thymus	Thymus
14	chr6:25032800-25035000	Weak transcription	K562	blood
15	chr6:25033000-25034600	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:25033200-25034600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:25033400-25034400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:25033400-25034600	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:25033600-25034000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:25033600-25034000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:25033600-25034000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:25033600-25034200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:25033600-25034200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:25033600-25034200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:25033600-25034400	Enhancers	Primary B cells from cord blood	blood
26	chr6:25033600-25034600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:25033600-25034600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:25033600-25034600	Enhancers	Dnd41	blood
29	chr6:25033800-25034400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:25033800-25034400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:25033800-25034600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links