Variant report

Variant	rs72477723
Chromosome Location	chr11:72755020-72755021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72743552..72745923-chr11:72752498..72755495,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12419767	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12421489	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72724400-72761000	Weak transcription	HSMM	muscle
2	chr11:72734200-72755200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:72739200-72759200	Weak transcription	Aorta	Aorta
4	chr11:72739400-72765800	Weak transcription	Spleen	Spleen
5	chr11:72739600-72757800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:72739600-72759200	Weak transcription	Osteobl	bone
7	chr11:72740000-72757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:72740000-72758400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:72740000-72758800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:72740000-72759200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:72740000-72771800	Weak transcription	Fetal Stomach	stomach
12	chr11:72740800-72758400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:72741400-72765000	Weak transcription	Fetal Heart	heart
14	chr11:72742000-72757800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:72743800-72758800	Weak transcription	HUVEC	blood vessel
16	chr11:72744200-72759200	Weak transcription	Pancreas	Pancrea
17	chr11:72744600-72758600	Weak transcription	Fetal Intestine Small	intestine
18	chr11:72745600-72761000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:72746200-72759200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:72746400-72759200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:72746600-72758400	Weak transcription	Primary T cells from cord blood	blood
22	chr11:72746600-72758400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:72746600-72758600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:72746600-72759200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr11:72746600-72759400	Weak transcription	Left Ventricle	heart
26	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
27	chr11:72746800-72759200	Weak transcription	Fetal Thymus	thymus
28	chr11:72747400-72758400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:72747400-72758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:72747600-72759200	Weak transcription	Dnd41	blood
31	chr11:72747800-72758800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:72749000-72758400	Weak transcription	Brain Anterior Caudate	brain
33	chr11:72750400-72758600	Weak transcription	HepG2	liver
34	chr11:72750600-72758200	Weak transcription	Liver	Liver
35	chr11:72750600-72758400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:72750600-72759200	Weak transcription	Fetal Intestine Large	intestine
37	chr11:72750600-72765800	Weak transcription	Ovary	ovary
38	chr11:72750800-72757600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr11:72750800-72759000	Weak transcription	Placenta	Placenta
40	chr11:72751400-72757800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr11:72751400-72759200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:72753000-72757800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:72753000-72758400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:72753400-72755600	Strong transcription	Primary B cells from cord blood	blood
45	chr11:72753400-72756000	ZNF genes & repeats	GM12878-XiMat	blood
46	chr11:72753600-72755600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:72753600-72758600	Weak transcription	Fetal Lung	lung
48	chr11:72753800-72757800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:72754000-72755200	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr11:72754200-72757800	Weak transcription	Primary hematopoietic stem cells	blood

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