Variant report

Variant	rs7249414
Chromosome Location	chr19:55673746-55673747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr19:55672980-55673763	H1-hESC	embryonic stem cell:	n/a	chr19:55673207-55673214

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:55579852..55582710-chr19:55671936..55674879,2	K562	blood:
2	chr19:55669904..55673815-chr19:55917688..55921815,5	K562	blood:
3	chr19:55668909..55673851-chr19:55684249..55689420,6	K562	blood:
4	chr19:55672196..55674741-chr19:55676544..55679173,3	K562	blood:
5	chr19:55666494..55670422-chr19:55672733..55675574,3	K562	blood:
6	chr19:55670813..55674787-chr19:55917654..55919984,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000267110	TF binding region
ENSG00000239137	TF binding region
DNAAF3	TF binding region
TNNI3	TF binding region
ENSG00000167646	Chromatin interaction
ENSG00000160439	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000267577	Chromatin interaction
ENSG00000129990	Chromatin interaction
ENSG00000129991	Chromatin interaction
ENSG00000239137	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2365725	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3848617	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7260320	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7260371	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534462	chr19:55028722-55683018	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv912451	chr19:55595687-55680746	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv912453	chr19:55672007-55690398	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55670800-55673800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
2	chr19:55671600-55677600	Weak transcription	Right Atrium	heart
3	chr19:55671800-55677600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:55672000-55677200	Weak transcription	NHEK	skin
5	chr19:55672200-55676800	Weak transcription	Hela-S3	cervix
6	chr19:55672600-55677200	Weak transcription	Left Ventricle	heart
7	chr19:55672600-55677200	Weak transcription	Pancreas	Pancrea
8	chr19:55672800-55677000	Weak transcription	Right Ventricle	heart
9	chr19:55672800-55677000	Weak transcription	K562	blood
10	chr19:55673200-55677200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr19:55673600-55673800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr19:55673600-55674000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:55673600-55677200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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