Variant report

Variant	rs7252420
Chromosome Location	chr19:55822491-55822492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:55722109..55723948-chr19:55820326..55823281,2	K562	blood:
2	chr19:55813385..55815096-chr19:55821249..55823203,2	K562	blood:
3	chr19:55815381..55816941-chr19:55820711..55822901,2	K562	blood:
4	chr19:55821590..55823656-chr19:55839712..55841231,2	K562	blood:
5	chr19:55819947..55823832-chr19:55824271..55826603,6	K562	blood:
6	chr19:55822070..55823832-chr19:55824905..55827613,2	K562	blood:
7	chr19:55821681..55823467-chr19:55850829..55852697,2	MCF-7	breast:
8	chr19:55822211..55824840-chr19:55897185..55900181,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133247	Chromatin interaction
ENSG00000108107	Chromatin interaction
ENSG00000160469	Chromatin interaction
ENSG00000267531	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17851414	1.00[AMR][1000 genomes]
rs59551167	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60578937	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73605127	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73605140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73605148	1.00[AMR][1000 genomes]
rs73605165	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73605195	1.00[AMR][1000 genomes]
rs73607029	1.00[AMR][1000 genomes]
rs73607052	1.00[AMR][1000 genomes]
rs73619590	1.00[AMR][1000 genomes]
rs73619602	1.00[AMR][1000 genomes]
rs73621321	1.00[AMR][1000 genomes]
rs73621332	1.00[AMR][1000 genomes]
rs73621334	1.00[AMR][1000 genomes]
rs73621343	1.00[AMR][1000 genomes]
rs73621359	1.00[AMR][1000 genomes]
rs73621364	1.00[AMR][1000 genomes]
rs73621369	1.00[AMR][1000 genomes]
rs73621370	1.00[AMR][1000 genomes]
rs9676742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1065760	chr19:55721521-55929740	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
3	nsv912455	chr19:55725410-55879872	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv912456	chr19:55725410-55925500	Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
5	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
6	nsv912458	chr19:55763409-55823822	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv912459	chr19:55791380-55845386	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
9	nsv912460	chr19:55814881-55897327	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55797400-55824600	Weak transcription	Gastric	stomach
2	chr19:55813200-55825200	Weak transcription	Left Ventricle	heart
3	chr19:55813200-55827600	Weak transcription	Lung	lung
4	chr19:55813400-55825000	Strong transcription	Brain Germinal Matrix	brain
5	chr19:55813600-55824800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr19:55813600-55827400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr19:55813600-55850000	Weak transcription	Right Atrium	heart
8	chr19:55813800-55822600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr19:55813800-55823200	Strong transcription	Brain Angular Gyrus	brain
10	chr19:55813800-55824000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr19:55813800-55824000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr19:55813800-55824400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr19:55813800-55827600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr19:55814000-55823000	Strong transcription	Fetal Stomach	stomach
15	chr19:55814000-55824600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr19:55814000-55825200	Strong transcription	Fetal Brain Female	brain
17	chr19:55814000-55827600	Weak transcription	A549	lung
18	chr19:55814200-55825000	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr19:55814400-55824600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr19:55814400-55831400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr19:55817000-55823000	Strong transcription	Fetal Muscle Trunk	muscle
22	chr19:55817600-55824800	Weak transcription	K562	blood
23	chr19:55818200-55823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr19:55818200-55827400	Weak transcription	Aorta	Aorta
25	chr19:55818200-55832400	Weak transcription	Colonic Mucosa	Colon
26	chr19:55818400-55822800	Weak transcription	HSMMtube	muscle
27	chr19:55818400-55824600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr19:55818400-55831000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr19:55818600-55822600	Weak transcription	Primary T cells from cord blood	blood
30	chr19:55818600-55823000	Weak transcription	Fetal Intestine Large	intestine
31	chr19:55818600-55823200	Weak transcription	Dnd41	blood
32	chr19:55818600-55823200	Weak transcription	NH-A	brain
33	chr19:55818600-55831200	Weak transcription	Right Ventricle	heart
34	chr19:55818800-55824200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr19:55818800-55824600	Weak transcription	Thymus	Thymus
36	chr19:55819200-55824200	Weak transcription	Fetal Lung	lung
37	chr19:55819800-55823200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr19:55820800-55823400	Weak transcription	Ovary	ovary
39	chr19:55820800-55839000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr19:55821000-55824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:55821000-55831000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr19:55821000-55831200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr19:55821200-55824800	Weak transcription	Fetal Kidney	kidney
44	chr19:55821400-55823400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr19:55821400-55824600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr19:55821400-55825600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr19:55821400-55825800	Strong transcription	Fetal Intestine Small	intestine
48	chr19:55821400-55827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr19:55821400-55827600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr19:55821400-55831000	Weak transcription	Osteobl	bone

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