The 2.0 version of rSNPBase

Variant report

Variant rs7253485
Chromosome Location chr19:44625042-44625043
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44618200-44635000 Weak transcription Stomach Mucosa stomach
2 chr19:44618400-44629200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr19:44618600-44631400 Weak transcription NHEK skin
4 chr19:44618600-44635000 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr19:44618800-44635000 Weak transcription HMEC breast
6 chr19:44619000-44633600 Weak transcription HUVEC blood vessel
7 chr19:44619600-44625600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr19:44619600-44625800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr19:44619600-44626000 Strong transcription Fetal Adrenal Gland Adrenal Gland
10 chr19:44619600-44626200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr19:44619600-44627200 Strong transcription Primary T helper cells fromperipheralblood blood
12 chr19:44619600-44629200 Strong transcription Brain Inferior Temporal Lobe brain
13 chr19:44619600-44630400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr19:44619600-44633200 Strong transcription Skeletal Muscle Female skeletal muscle
15 chr19:44619600-44637200 Strong transcription Cortex derived primary cultured neurospheres brain
16 chr19:44619600-44638600 ZNF genes & repeats Liver Liver
17 chr19:44619800-44625200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr19:44619800-44625400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr19:44619800-44625400 Strong transcription Thymus Thymus
20 chr19:44619800-44625600 Strong transcription Fetal Muscle Trunk muscle
21 chr19:44619800-44625800 Strong transcription Left Ventricle heart
22 chr19:44619800-44625800 Strong transcription Ovary ovary
23 chr19:44619800-44626600 Strong transcription Primary T cells from cord blood blood
24 chr19:44619800-44627000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr19:44619800-44627600 Strong transcription Primary T helper cells PMA-I stimulated --
26 chr19:44619800-44629200 Strong transcription Fetal Muscle Leg muscle
27 chr19:44619800-44630600 Strong transcription Duodenum Mucosa Duodenum
28 chr19:44619800-44635000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr19:44620000-44634600 Strong transcription Brain Hippocampus Middle brain
30 chr19:44620000-44635400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr19:44620200-44625200 Strong transcription Fetal Brain Female brain
32 chr19:44620200-44625800 Strong transcription Primary T cells fromperipheralblood blood
33 chr19:44620200-44629000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr19:44620400-44625200 Strong transcription HUES64 Cell Line embryonic stem cell
35 chr19:44620400-44625200 Strong transcription Dnd41 blood
36 chr19:44620400-44625600 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr19:44620400-44625800 Strong transcription Primary neutrophils fromperipheralblood blood
38 chr19:44620400-44626200 Strong transcription Fetal Intestine Large intestine
39 chr19:44620400-44635000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr19:44620400-44635000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr19:44621200-44629000 Strong transcription Colon Smooth Muscle Colon
42 chr19:44621200-44630200 Strong transcription Primary T helper naive cells fromperipheralblood blood
43 chr19:44621400-44625200 Strong transcription Primary T helper naive cells from peripheral blood blood
44 chr19:44621400-44625200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr19:44621400-44625400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr19:44621400-44625400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
47 chr19:44621400-44625800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
48 chr19:44621400-44625800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr19:44621400-44627000 Strong transcription Primary B cells from cord blood blood
50 chr19:44621600-44625200 Strong transcription Placenta Placenta

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Last update: Aug 31, 2015