Variant report

Variant	rs7253963
Chromosome Location	chr19:20816674-20816675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10405703	0.87[AMR][1000 genomes]
rs10410025	0.85[AMR][1000 genomes]
rs10414840	0.81[AMR][1000 genomes]
rs10419521	0.84[AMR][1000 genomes]
rs10420114	0.85[AMR][1000 genomes]
rs10423967	0.85[AMR][1000 genomes]
rs10854032	0.87[AMR][1000 genomes]
rs11085368	0.87[AMR][1000 genomes]
rs11085370	0.85[AMR][1000 genomes]
rs11667375	0.87[AMR][1000 genomes]
rs12975304	0.86[AMR][1000 genomes]
rs274801	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs274802	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs274803	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs274804	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs274805	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs274806	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs274807	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs274809	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs274815	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4599041	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4644961	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4808254	0.87[AMR][1000 genomes]
rs4808256	0.84[AMR][1000 genomes]
rs4809081	0.83[AMR][1000 genomes]
rs4809083	0.85[AMR][1000 genomes]
rs7247393	0.83[AMR][1000 genomes]
rs7252292	0.85[AMR][1000 genomes]
rs7254057	0.84[AMR][1000 genomes]
rs7254509	0.85[AMR][1000 genomes]
rs7256231	0.85[AMR][1000 genomes]
rs7258892	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8100262	0.85[AMR][1000 genomes]
rs8100360	0.85[AMR][1000 genomes]
rs8100509	0.85[AMR][1000 genomes]
rs8100596	0.85[AMR][1000 genomes]
rs8104278	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8112343	0.86[AMR][1000 genomes]
rs9304971	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9304973	0.81[AMR][1000 genomes]
rs959419	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9917099	0.85[AMR][1000 genomes]
rs9917105	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3319016	chr19:19917475-20819154	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
2	esv3319017	chr19:19917475-20819154	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
3	esv3390957	chr19:19965887-20819154	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv911325	chr19:20151257-21071548	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
5	nsv911332	chr19:20574295-20819154	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
6	nsv911333	chr19:20574295-20819154	ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
7	esv2758489	chr19:20574295-20845947	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	esv2758749	chr19:20574295-20845947	ZNF genes & repeats Genic enhancers Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
9	nsv530804	chr19:20574295-21001349	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
10	nsv458390	chr19:20576399-20819154	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
11	nsv458391	chr19:20576399-20819154	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
12	nsv578819	chr19:20576399-20819154	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20811600-20816800	Weak transcription	Fetal Heart	heart
2	chr19:20812400-20827200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:20814600-20842200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:20814800-20820200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr19:20815000-20825400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr19:20815000-20827400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:20815000-20827400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:20815000-20843400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr19:20815200-20843200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:20815400-20816800	ZNF genes & repeats	Brain Hippocampus Middle	brain
11	chr19:20815400-20816800	ZNF genes & repeats	Fetal Stomach	stomach
12	chr19:20815400-20821000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:20815600-20817000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr19:20815800-20816800	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr19:20815800-20820200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr19:20815800-20827200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
17	chr19:20816000-20816800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
18	chr19:20816000-20816800	ZNF genes & repeats	Aorta	Aorta
19	chr19:20816000-20816800	ZNF genes & repeats	Fetal Intestine Large	intestine
20	chr19:20816000-20820200	ZNF genes & repeats	Placenta	Placenta
21	chr19:20816000-20822600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr19:20816200-20816800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:20816200-20816800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
24	chr19:20816200-20816800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr19:20816200-20816800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr19:20816200-20816800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
27	chr19:20816200-20816800	ZNF genes & repeats	Esophagus	oesophagus
28	chr19:20816200-20816800	ZNF genes & repeats	Gastric	stomach
29	chr19:20816200-20816800	ZNF genes & repeats	Left Ventricle	heart
30	chr19:20816200-20816800	ZNF genes & repeats	Lung	lung
31	chr19:20816200-20816800	ZNF genes & repeats	Ovary	ovary
32	chr19:20816200-20816800	ZNF genes & repeats	Pancreas	Pancrea
33	chr19:20816200-20816800	ZNF genes & repeats	Psoas Muscle	Psoas
34	chr19:20816200-20816800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
35	chr19:20816200-20816800	ZNF genes & repeats	Right Ventricle	heart
36	chr19:20816200-20816800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr19:20816200-20816800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
38	chr19:20816200-20816800	ZNF genes & repeats	Thymus	Thymus
39	chr19:20816200-20817000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
40	chr19:20816200-20817000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr19:20816200-20817000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
42	chr19:20816200-20817600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr19:20816200-20817600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:20816200-20818200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
45	chr19:20816200-20818200	ZNF genes & repeats	HSMMtube	muscle
46	chr19:20816200-20818400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
47	chr19:20816200-20818400	ZNF genes & repeats	Brain Substantia Nigra	brain
48	chr19:20816200-20818400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
49	chr19:20816200-20818600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
50	chr19:20816200-20818800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links