Variant report

Variant	rs7256030
Chromosome Location	chr19:42460176-42460177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:42459797..42462161-chr19:42571627..42574453,2	MCF-7	breast:
2	chr19:42381223..42383832-chr19:42460147..42462553,2	MCF-7	breast:
3	chr19:42361938..42366462-chr19:42459916..42465209,13	K562	blood:
4	chr19:42387951..42392334-chr19:42459610..42463737,7	MCF-7	breast:
5	chr19:42456140..42457708-chr19:42458791..42460408,2	K562	blood:
6	chr19:42385318..42391505-chr19:42458040..42463569,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000076928	Chromatin interaction
ENSG00000105737	Chromatin interaction
ENSG00000105732	Chromatin interaction
ENSG00000105369	Chromatin interaction
ENSG00000105372	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3745221	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv911777	chr19:42357455-42521108	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	esv1805469	chr19:42367635-42798851	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv911780	chr19:42398450-42521108	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv911781	chr19:42398450-42542999	Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42445200-42461000	Weak transcription	Small Intestine	intestine
2	chr19:42445400-42460200	Weak transcription	Pancreas	Pancrea
3	chr19:42445600-42462400	Weak transcription	Right Atrium	heart
4	chr19:42451200-42461600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:42451200-42462000	Weak transcription	Primary T cells from cord blood	blood
6	chr19:42455800-42461000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr19:42455800-42462400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:42456000-42460200	Weak transcription	Right Ventricle	heart
9	chr19:42456000-42462000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr19:42456200-42460200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr19:42456200-42460200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr19:42456200-42460200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr19:42456200-42460200	Weak transcription	A549	lung
14	chr19:42456200-42460200	Weak transcription	Dnd41	blood
15	chr19:42456200-42460400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:42456200-42460400	Weak transcription	Fetal Thymus	thymus
17	chr19:42456200-42460600	Weak transcription	HUVEC	blood vessel
18	chr19:42456200-42461000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr19:42456200-42461200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr19:42456200-42461400	Weak transcription	HepG2	liver
21	chr19:42456200-42461400	Weak transcription	HMEC	breast
22	chr19:42456200-42461400	Weak transcription	NHDF-Ad	bronchial
23	chr19:42456200-42461600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr19:42456200-42461600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr19:42456200-42461600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr19:42456200-42461600	Weak transcription	Brain Angular Gyrus	brain
27	chr19:42456200-42461600	Weak transcription	GM12878-XiMat	blood
28	chr19:42456200-42461600	Weak transcription	HSMM	muscle
29	chr19:42456200-42461800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr19:42456200-42461800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr19:42456200-42461800	Weak transcription	Primary B cells from cord blood	blood
32	chr19:42456200-42461800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr19:42456200-42461800	Weak transcription	Fetal Lung	lung
34	chr19:42456200-42462000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:42456200-42462000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr19:42456200-42462000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr19:42456200-42462200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr19:42456200-42462200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr19:42456200-42462400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr19:42458400-42461400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr19:42458400-42461800	Weak transcription	Colon Smooth Muscle	Colon
42	chr19:42458400-42462200	Weak transcription	HSMMtube	muscle
43	chr19:42458800-42462200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr19:42459000-42461200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr19:42459000-42461400	Strong transcription	Fetal Stomach	stomach
46	chr19:42459200-42460800	Strong transcription	Spleen	Spleen
47	chr19:42459200-42461400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr19:42459200-42461600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr19:42459200-42461600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr19:42459200-42461600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links