Variant report

Variant	rs7256201
Chromosome Location	chr19:51705039-51705040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv978754	chr19:51705011-51710491	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7256201	VN1R2	cis	parietal	SCAN
rs7256201	USP29	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51696400-51705400	Weak transcription	Right Atrium	heart
2	chr19:51704400-51705600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr19:51704600-51705200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:51704600-51705600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:51704600-51706800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr19:51704800-51709000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr19:51704800-51715000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:51705000-51705200	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr19:51705000-51706600	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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