Variant report

Variant	rs7256550
Chromosome Location	chr19:19580961-19580962
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19573739..19577960-chr19:19580596..19583736,3	MCF-7	breast:
2	chr19:19570376..19575066-chr19:19577857..19582377,6	K562	blood:
3	chr19:19574470..19576025-chr19:19580861..19583746,2	MCF-7	breast:
4	chr19:19580831..19583054-chr19:19584529..19587065,3	K562	blood:
5	chr19:19565575..19567563-chr19:19580262..19582259,2	K562	blood:

Variant related genes	Relation type
ENSG00000167491	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1054308	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12462698	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12971734	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033481	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2965187	0.89[ASN][1000 genomes]
rs34183201	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34539063	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35156688	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36113815	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4808201	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4808949	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4808963	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74181134	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74181137	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7508358	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7508458	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19575600-19581600	ZNF genes & repeats	GM12878-XiMat	blood
2	chr19:19575800-19581600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:19577800-19582600	Weak transcription	Gastric	stomach
4	chr19:19577800-19598000	Weak transcription	Ovary	ovary
5	chr19:19578000-19583600	Weak transcription	Pancreas	Pancrea
6	chr19:19579000-19584800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:19579200-19581200	Weak transcription	Aorta	Aorta
8	chr19:19579200-19581800	Weak transcription	Spleen	Spleen
9	chr19:19579200-19582600	Weak transcription	Left Ventricle	heart
10	chr19:19579200-19582600	Weak transcription	Lung	lung
11	chr19:19579200-19583400	Weak transcription	Esophagus	oesophagus
12	chr19:19579200-19583400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr19:19579200-19583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:19579200-19585000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr19:19579200-19585000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:19579200-19585400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr19:19579200-19585800	Weak transcription	Hela-S3	cervix
18	chr19:19579200-19586000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr19:19579200-19598000	Weak transcription	Small Intestine	intestine
20	chr19:19579400-19581600	Weak transcription	NHEK	skin
21	chr19:19579400-19584000	Weak transcription	Right Ventricle	heart
22	chr19:19579400-19585600	Weak transcription	Fetal Heart	heart
23	chr19:19579400-19599400	Weak transcription	Brain Angular Gyrus	brain
24	chr19:19579600-19581800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr19:19579600-19583600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr19:19579600-19584800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr19:19579800-19581200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr19:19579800-19581400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr19:19579800-19581400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr19:19579800-19581400	Weak transcription	Adipose Nuclei	Adipose
31	chr19:19579800-19581400	Weak transcription	K562	blood
32	chr19:19579800-19581600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr19:19579800-19581800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr19:19579800-19581800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr19:19579800-19582000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr19:19579800-19582200	Weak transcription	Primary T cells from cord blood	blood
37	chr19:19579800-19582200	Weak transcription	Liver	Liver
38	chr19:19579800-19582200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr19:19579800-19582200	Weak transcription	Dnd41	blood
40	chr19:19579800-19582400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:19579800-19582600	Weak transcription	Placenta	Placenta
42	chr19:19579800-19582600	Weak transcription	Stomach Mucosa	stomach
43	chr19:19579800-19582600	Weak transcription	HepG2	liver
44	chr19:19579800-19582800	Weak transcription	HSMMtube	muscle
45	chr19:19579800-19583200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr19:19579800-19583400	Weak transcription	Colonic Mucosa	Colon
47	chr19:19579800-19583400	Weak transcription	A549	lung
48	chr19:19579800-19583600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr19:19579800-19583600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr19:19579800-19583600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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