Variant report

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:56218801-56219706	U87	brain:	n/a	n/a
2	POLR2A	chr19:56218849-56219349	GM12892	blood:	n/a	n/a
3	POLR2A	chr19:56217873-56219707	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr19:56214997-56220979	K562	blood:	n/a	n/a
5	POLR2A	chr19:56218368-56219340	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr19:56218721-56219498	H1-hESC	embryonic stem cell:	n/a	n/a
7	GTF2F1	chr19:56218886-56219368	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr19:56219253-56220046	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr19:56219256-56219643	HUVEC	blood vessel:	n/a	n/a
10	POLR2A	chr19:56217212-56220604	PANC-1	pancreas:	n/a	n/a
11	POLR2A	chr19:56218859-56219442	K562	blood:	n/a	n/a
12	POLR2A	chr19:56218791-56219606	U87	brain:	n/a	n/a
13	POLR2A	chr19:56218754-56220857	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr19:56218656-56219419	GM12891	blood:	n/a	n/a
15	BCL3	chr19:56218563-56219352	A549	lung:	n/a	n/a
16	E2F6	chr19:56218838-56219372	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr19:56218511-56220412	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr19:56219167-56219600	HepG2	liver:	n/a	n/a
19	POLR2A	chr19:56218551-56219599	A549	lung:	n/a	n/a
20	POLR2A	chr19:56218550-56219462	U87	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:56187596..56189855-chr19:56218072..56219589,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:17)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428026	chr19:56130849-56423514	Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases
2	nsv833882	chr19:56158633-56326564	Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1057383	chr19:56211031-56456028	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56208000-56220000	Weak transcription	Fetal Lung	lung
2	chr19:56210000-56219600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr19:56210000-56220000	Weak transcription	Fetal Brain Female	brain
4	chr19:56211200-56220800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr19:56212400-56224000	Weak transcription	HSMM	muscle
6	chr19:56213200-56219400	Weak transcription	Adipose Nuclei	Adipose
7	chr19:56215600-56220600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr19:56215800-56228000	Weak transcription	Pancreas	Pancrea
9	chr19:56216400-56219800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:56216400-56224400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:56216600-56220400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr19:56216800-56221400	Weak transcription	Fetal Intestine Large	intestine
13	chr19:56217000-56220200	Weak transcription	Fetal Intestine Small	intestine
14	chr19:56219200-56219400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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