Variant report

Variant	rs7256802
Chromosome Location	chr19:19288699-19288700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19286456..19293705-chr19:19298673..19304955,13	K562	blood:
2	chr19:19285194..19288859-chr19:19295274..19298317,3	K562	blood:
3	chr19:19288334..19290491-chr19:19291596..19294334,2	K562	blood:
4	chr19:19280512..19282553-chr19:19286419..19290416,4	K562	blood:
5	chr19:19287450..19289684-chr19:19301395..19303097,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM161A-1	chr19:19287713-19291410	NONHSAT063025

No data

Variant related genes	Relation type
ENSG00000064490	Chromatin interaction
ENSG00000064489	Chromatin interaction
ENSG00000254901	Chromatin interaction
ENSG00000213999	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10417796	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10418053	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1050544	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10854009	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11085253	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12975096	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12980955	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2239370	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2283623	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2314035	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4808185	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs759999	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833779	chr19:19163492-19313091	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19259000-19290200	Weak transcription	Colon Smooth Muscle	Colon
2	chr19:19277400-19300600	Weak transcription	Small Intestine	intestine
3	chr19:19280800-19301600	Weak transcription	NHEK	skin
4	chr19:19281400-19290200	Weak transcription	Brain Substantia Nigra	brain
5	chr19:19281400-19292200	Weak transcription	HMEC	breast
6	chr19:19281400-19300800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr19:19281600-19289000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr19:19281600-19290400	Weak transcription	Fetal Lung	lung
9	chr19:19281600-19290600	Weak transcription	Fetal Brain Female	brain
10	chr19:19281600-19290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:19281600-19290800	Weak transcription	Brain Angular Gyrus	brain
12	chr19:19281600-19292000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr19:19281600-19293000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr19:19281600-19297200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr19:19281600-19299400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr19:19281600-19300600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:19281600-19302000	Weak transcription	NH-A	brain
18	chr19:19281600-19302200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:19281800-19289200	Weak transcription	Brain Hippocampus Middle	brain
20	chr19:19281800-19290600	Weak transcription	Brain Germinal Matrix	brain
21	chr19:19281800-19300000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr19:19281800-19301200	Weak transcription	Stomach Mucosa	stomach
23	chr19:19282000-19292200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr19:19282000-19301600	Weak transcription	Fetal Heart	heart
25	chr19:19283000-19292200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr19:19283400-19290200	Weak transcription	NHLF	lung
27	chr19:19283400-19290400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr19:19283400-19290800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:19283400-19290800	Weak transcription	A549	lung
30	chr19:19283400-19291000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr19:19283400-19292200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr19:19283400-19300600	Weak transcription	Psoas Muscle	Psoas
33	chr19:19283400-19301600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr19:19283400-19302000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr19:19283400-19302200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr19:19283600-19301800	Weak transcription	HSMMtube	muscle
37	chr19:19283800-19290200	Weak transcription	Osteobl	bone
38	chr19:19283800-19291000	Weak transcription	Hela-S3	cervix
39	chr19:19283800-19292200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr19:19284200-19302000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr19:19284600-19290800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr19:19285400-19290800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr19:19285600-19301800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr19:19286000-19290200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr19:19286000-19290400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr19:19286000-19290600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:19286000-19290600	Weak transcription	GM12878-XiMat	blood
48	chr19:19286000-19290800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr19:19286000-19290800	Strong transcription	Fetal Stomach	stomach
50	chr19:19286000-19292800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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