Variant report

Variant	rs7257125
Chromosome Location	chr19:38290440-38290441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10401637	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10401968	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10402530	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10404567	0.81[EUR][1000 genomes]
rs10409402	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10409487	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10420891	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10427125	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11878269	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879180	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12975057	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs171376	0.84[EUR][1000 genomes]
rs2075281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs241932	0.82[EUR][1000 genomes]
rs241950	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35209753	0.83[EUR][1000 genomes]
rs3848626	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4802135	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4803509	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4803524	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58449039	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6508742	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7250571	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7250868	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7252010	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7258597	0.81[EUR][1000 genomes]
rs8101752	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8101858	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8102579	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8104076	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8112706	0.83[EUR][1000 genomes]
rs8182498	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs856300	0.81[EUR][1000 genomes]
rs856304	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9304569	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv960835	chr19:38270238-38293706	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1057428	chr19:38282158-38320814	Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7257125	WDR87	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38290200-38291000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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