Variant report

Variant	rs7257806
Chromosome Location	chr19:36537184-36537185
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36498459..36500910-chr19:36535292..36537978,3	MCF-7	breast:
2	chr19:36534753..36537195-chr19:36544858..36547286,2	K562	blood:

Variant related genes	Relation type
ENSG00000161277	Chromatin interaction
ENSG00000075702	Chromatin interaction
ENSG00000181392	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11880041	1.00[EUR][1000 genomes]
rs11880325	1.00[EUR][1000 genomes]
rs11881368	1.00[EUR][1000 genomes]
rs11881607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12979978	1.00[EUR][1000 genomes]
rs17878759	1.00[AMR][1000 genomes]
rs2231575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7245415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7245686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7246818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7257438	1.00[EUR][1000 genomes]
rs8105644	1.00[EUR][1000 genomes]
rs8106415	1.00[EUR][1000 genomes]
rs8106581	1.00[EUR][1000 genomes]
rs8108828	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	nsv833815	chr19:36519803-36624936	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36506400-36544400	Weak transcription	GM12878-XiMat	blood
2	chr19:36515400-36544600	Weak transcription	Pancreas	Pancrea
3	chr19:36524200-36543800	Weak transcription	Left Ventricle	heart
4	chr19:36524200-36544000	Weak transcription	Primary B cells from cord blood	blood
5	chr19:36524200-36544400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr19:36524200-36544400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr19:36524200-36544400	Weak transcription	Aorta	Aorta
8	chr19:36524400-36537200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:36524400-36537200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr19:36524400-36543800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr19:36524400-36544000	Weak transcription	Fetal Lung	lung
12	chr19:36526400-36544200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:36526600-36540200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr19:36526600-36544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr19:36526800-36544400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr19:36527000-36544600	Weak transcription	Gastric	stomach
17	chr19:36528400-36544000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr19:36528600-36543800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr19:36528600-36543800	Weak transcription	Fetal Thymus	thymus
20	chr19:36528600-36544000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr19:36528600-36544000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr19:36528600-36544400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr19:36528600-36544400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr19:36530400-36537600	Weak transcription	Right Ventricle	heart
25	chr19:36530400-36544200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:36530400-36544400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr19:36530600-36537200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:36530600-36543800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr19:36530600-36544000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr19:36530600-36544400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr19:36530800-36537200	Weak transcription	Brain Hippocampus Middle	brain
32	chr19:36530800-36537400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr19:36530800-36543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr19:36530800-36543800	Weak transcription	Brain Germinal Matrix	brain
35	chr19:36530800-36543800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr19:36531000-36543800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr19:36531000-36543800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr19:36531000-36543800	Weak transcription	Fetal Muscle Leg	muscle
39	chr19:36531000-36544000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:36531000-36544000	Weak transcription	Esophagus	oesophagus
41	chr19:36531200-36537400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr19:36531200-36543800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr19:36531200-36544000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr19:36531400-36544000	Weak transcription	Spleen	Spleen
45	chr19:36531800-36537400	Weak transcription	Fetal Intestine Small	intestine
46	chr19:36531800-36541400	Weak transcription	Fetal Stomach	stomach
47	chr19:36531800-36543600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:36532600-36543800	Weak transcription	Fetal Intestine Large	intestine
49	chr19:36532800-36539800	Weak transcription	HMEC	breast
50	chr19:36532800-36539800	Weak transcription	NHEK	skin

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