Variant report

Variant	rs7258510
Chromosome Location	chr19:40670431-40670432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7256297	1.00[AFR][1000 genomes]
rs73547648	1.00[AMR][1000 genomes]
rs73553657	1.00[AFR][1000 genomes]
rs73553673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555557	1.00[AMR][1000 genomes]
rs73555567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv528831	chr19:40665924-40684919	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40654200-40673400	Weak transcription	Right Atrium	heart
2	chr19:40667400-40671800	Enhancers	Primary B cells from cord blood	blood
3	chr19:40667400-40671800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr19:40667600-40670600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:40667600-40671800	Enhancers	Primary B cells from peripheral blood	blood
6	chr19:40668000-40676800	Weak transcription	HepG2	liver
7	chr19:40668400-40671800	Enhancers	GM12878-XiMat	blood
8	chr19:40669200-40671600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr19:40669800-40671000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr19:40669800-40671200	Weak transcription	A549	lung
11	chr19:40670000-40671200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr19:40670000-40671200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr19:40670000-40671200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr19:40670000-40671200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr19:40670000-40671400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr19:40670200-40671200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr19:40670200-40671200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr19:40670200-40671200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:40670400-40671600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links