Variant report

Variant	rs7258794
Chromosome Location	chr19:51426253-51426254
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51425192..51426275-chr19:51597983..51598594,3	MCF-7	breast:
2	chr19:51295981..51299062-chr19:51425075..51427456,3	MCF-7	breast:
3	chr19:51298091..51299895-chr19:51425770..51427626,2	MCF-7	breast:
4	chr19:51305398..51307185-chr19:51424202..51426690,2	MCF-7	breast:
5	chr19:51170642..51172342-chr19:51424128..51427049,2	K562	blood:
6	chr19:51411727..51414183-chr19:51423578..51426767,3	K562	blood:
7	chr19:51303003..51307595-chr19:51424034..51426831,5	K562	blood:
8	chr19:51297246..51301277-chr19:51424078..51428279,6	K562	blood:
9	chr19:51298106..51301277-chr19:51425216..51427297,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000268375	Chromatin interaction
ENSG00000167747	Chromatin interaction
ENSG00000220988	Chromatin interaction
ENSG00000213023	Chromatin interaction
ENSG00000167749	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs268917	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs268919	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs268922	0.80[EUR][1000 genomes]
rs6509501	0.89[EUR][1000 genomes]
rs8101572	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs870361	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060760	chr19:50883425-51463712	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv1058177	chr19:50984774-51463712	Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51424200-51427600	Weak transcription	Right Atrium	heart
2	chr19:51426000-51427600	Weak transcription	HMEC	breast
3	chr19:51426000-51427800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr19:51426000-51427800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr19:51426000-51427800	Weak transcription	NHEK	skin
6	chr19:51426000-51429200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:51426000-51432200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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