Variant report

Variant	rs7260180
Chromosome Location	chr19:45028169-45028170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

No data

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
2	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
3	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
4	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
5	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
6	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
7	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
8	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395
9	lnc-ZNF180-1	chr19:45028019-45028294	ENSG00000176395

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11667885	0.80[AFR][1000 genomes]
rs11670955	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap]
rs12979443	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12982449	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2103262	1.00[CEU][hapmap]
rs939902	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061350	chr19:44869075-45035469	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7260180	KDELR1	cis	cerebellum	SCAN
rs7260180	BCL2L12	cis	parietal	SCAN
rs7260180	ASPDH	cis	parietal	SCAN
rs7260180	ZNF160	cis	parietal	SCAN
rs7260180	ZNF534	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45028000-45028400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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