Variant report

Variant	rs72609846
Chromosome Location	chr8:126603980-126603981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126440732..126445779-chr8:126600349..126612045,20	MCF-7	breast:
2	chr8:126602958..126605776-chr8:126609153..126611231,2	MCF-7	breast:
3	chr8:126602321..126604094-chr8:126616027..126618273,2	MCF-7	breast:
4	chr8:126585008..126593535-chr8:126599853..126611131,18	MCF-7	breast:
5	chr8:126601013..126605207-chr8:126607092..126609721,3	MCF-7	breast:
6	chr8:126601003..126603272-chr8:126603536..126606567,4	MCF-7	breast:
7	chr8:126588355..126592631-chr8:126600736..126604091,3	MCF-7	breast:
8	chr8:126593642..126596532-chr8:126599701..126606279,16	MCF-7	breast:
9	chr8:126441094..126445421-chr8:126601055..126606149,10	MCF-7	breast:
10	chr8:126592961..126594666-chr8:126603938..126605486,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60902550	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1015513	chr8:126602536-126618074	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126600000-126604200	Weak transcription	Aorta	Aorta
2	chr8:126602200-126604400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:126602200-126606600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:126602200-126608600	Enhancers	Placenta	Placenta
5	chr8:126602400-126606800	Enhancers	NHEK	skin
6	chr8:126602400-126607400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr8:126602600-126605400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:126602600-126606800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:126602800-126607400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr8:126603200-126604200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:126603400-126604600	Enhancers	Fetal Intestine Small	intestine
12	chr8:126603400-126605400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:126603600-126604000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:126603600-126605200	Enhancers	HMEC	breast
15	chr8:126603800-126604600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:126603800-126607000	Enhancers	Esophagus	oesophagus
17	chr8:126603800-126607200	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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