Variant report

Variant	rs72611994
Chromosome Location	chr6:107724352-107724353
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11123106	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12464508	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12466349	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12468918	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12478206	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12612057	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12618696	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1978584	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3980656	0.83[AMR][1000 genomes]
rs58768941	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59995989	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72611993	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030534	chr6:107621477-107808190	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv830762	chr6:107653951-107852194	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107714400-107730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:107715800-107725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:107716400-107725800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:107716600-107725200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:107716600-107726000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:107717200-107725400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:107719800-107726200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:107720000-107724800	Weak transcription	Thymus	Thymus
9	chr6:107720800-107726200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:107721200-107725200	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr6:107721600-107732600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:107721800-107730600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:107722000-107724400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:107722000-107725600	Weak transcription	Left Ventricle	heart
15	chr6:107722000-107735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:107722200-107725800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
17	chr6:107722400-107735600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:107722600-107724400	Weak transcription	Ovary	ovary
19	chr6:107722800-107728000	Weak transcription	Fetal Heart	heart
20	chr6:107722800-107734600	Weak transcription	Right Ventricle	heart
21	chr6:107723800-107725000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr6:107724000-107724800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr6:107724000-107724800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:107724000-107724800	ZNF genes & repeats	Fetal Lung	lung
25	chr6:107724000-107725000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr6:107724000-107725000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:107724000-107725000	ZNF genes & repeats	Aorta	Aorta
28	chr6:107724000-107725600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:107724000-107726000	ZNF genes & repeats	Primary T cells from cord blood	blood
30	chr6:107724200-107724600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
31	chr6:107724200-107724800	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr6:107724200-107725000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:107724200-107725600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr6:107724200-107726200	ZNF genes & repeats	Fetal Muscle Leg	muscle

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