Variant report

Variant	rs726131
Chromosome Location	chr18:43864568-43864569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11877350	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12454696	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17686457	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs726131	ATP5A1	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr18:43852200-43879000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr18:43853000-43877800	Weak transcription	Primary T cells from cord blood	blood
4	chr18:43857000-43877800	Weak transcription	Aorta	Aorta
5	chr18:43859200-43869400	Weak transcription	Left Ventricle	heart
6	chr18:43860400-43873000	Weak transcription	Fetal Heart	heart
7	chr18:43861400-43864600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:43861400-43864600	Enhancers	Hela-S3	cervix
9	chr18:43861800-43864800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:43862400-43870200	Weak transcription	Liver	Liver
11	chr18:43863000-43864600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:43863200-43864600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:43863600-43870600	Weak transcription	Spleen	Spleen
14	chr18:43864200-43869000	Weak transcription	Psoas Muscle	Psoas
15	chr18:43864400-43865600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr18:43864400-43865800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:43864400-43869800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr18:43864400-43873400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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