Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11938981	0.82[ASN][1000 genomes]
rs1589475	1.00[AFR][1000 genomes]
rs17007291	1.00[AFR][1000 genomes]
rs17007293	1.00[AFR][1000 genomes]
rs17007425	0.88[ASN][1000 genomes]
rs2139994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57470227	0.90[ASN][1000 genomes]
rs60080476	0.87[ASN][1000 genomes]
rs68144038	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72615906	0.84[EUR][1000 genomes]
rs72615907	0.84[EUR][1000 genomes]
rs72615921	1.00[AFR][1000 genomes]
rs72615922	1.00[AFR][1000 genomes]
rs72615923	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72615927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72615929	0.90[ASN][1000 genomes]
rs72615930	0.90[ASN][1000 genomes]
rs72615931	0.90[ASN][1000 genomes]
rs72615932	0.90[ASN][1000 genomes]
rs72615934	0.90[ASN][1000 genomes]
rs72615935	0.90[ASN][1000 genomes]
rs72615936	0.90[ASN][1000 genomes]
rs72615953	0.88[ASN][1000 genomes]
rs72615954	0.88[ASN][1000 genomes]
rs72615955	0.88[ASN][1000 genomes]
rs72615956	0.87[ASN][1000 genomes]
rs72615957	0.87[ASN][1000 genomes]
rs9790756	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142385800-142407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:142390800-142404400	Weak transcription	Pancreas	Pancrea

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