Variant report

Variant	rs72625403
Chromosome Location	chr3:118197479-118197480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10511374	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12491385	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12630012	0.88[AMR][1000 genomes]
rs12634577	0.88[AMR][1000 genomes]
rs12639472	0.88[AMR][1000 genomes]
rs2139547	0.88[AMR][1000 genomes]
rs57570219	0.88[AMR][1000 genomes]
rs72625404	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460829	chr3:118195601-118229370	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591349	chr3:118195601-118229370	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118196400-118198200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:118196600-118198000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:118196800-118198000	Enhancers	Hela-S3	cervix
4	chr3:118196800-118198200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:118197000-118198600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:118197200-118197600	Flanking Active TSS	GM12878-XiMat	blood
7	chr3:118197200-118199400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:118197200-118199600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:118197200-118199600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:118197200-118200800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:118197200-118201200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:118197200-118201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:118197400-118197600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr3:118197400-118198000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:118197400-118198600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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