Variant report

Variant	rs7262697
Chromosome Location	chr20:25045754-25045755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:25038155..25040423-chr20:25044509..25046353,3	MCF-7	breast:
2	chr20:24974184..24976552-chr20:25044724..25047326,32	MCF-7	breast:
3	chr20:25039944..25042062-chr20:25044050..25046004,2	K562	blood:
4	chr20:24959138..24961345-chr20:25043562..25046337,2	MCF-7	breast:
5	chr20:24975304..24980368-chr20:25042845..25047055,6	MCF-7	breast:
6	chr20:24972253..24980445-chr20:25044479..25049663,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101474	Chromatin interaction
ENSG00000154930	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7266133	1.00[AMR][1000 genomes]
rs7273998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25040200-25046000	Weak transcription	Spleen	Spleen
2	chr20:25040600-25045800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr20:25040800-25046200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr20:25041000-25046200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr20:25042000-25045800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr20:25042800-25045800	Weak transcription	Gastric	stomach
7	chr20:25044200-25046400	Enhancers	Brain Substantia Nigra	brain
8	chr20:25044400-25045800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr20:25044600-25045800	Weak transcription	Pancreas	Pancrea
10	chr20:25044600-25047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr20:25044800-25046400	Enhancers	Right Ventricle	heart
12	chr20:25044800-25046800	Enhancers	Brain Anterior Caudate	brain
13	chr20:25044800-25046800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr20:25044800-25047400	Enhancers	Placenta	Placenta
15	chr20:25045000-25047400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr20:25045200-25046400	Enhancers	Brain Angular Gyrus	brain
17	chr20:25045200-25046400	Enhancers	Left Ventricle	heart
18	chr20:25045200-25046600	Enhancers	Brain Cingulate Gyrus	brain
19	chr20:25045200-25046800	Enhancers	Brain Hippocampus Middle	brain
20	chr20:25045200-25046800	Enhancers	Stomach Mucosa	stomach
21	chr20:25045200-25047200	Enhancers	Fetal Intestine Large	intestine
22	chr20:25045400-25045800	Enhancers	Duodenum Mucosa	Duodenum
23	chr20:25045400-25046200	Weak transcription	Colon Smooth Muscle	Colon
24	chr20:25045400-25046400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr20:25045400-25046400	Enhancers	Fetal Thymus	thymus
26	chr20:25045400-25046800	Enhancers	Fetal Intestine Small	intestine
27	chr20:25045400-25047800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr20:25045600-25046400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr20:25045600-25046400	Enhancers	Dnd41	blood
30	chr20:25045600-25046600	Flanking Active TSS	HepG2	liver
31	chr20:25045600-25046800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr20:25045600-25046800	Enhancers	Liver	Liver

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