Variant report

Variant	rs72629431
Chromosome Location	chr13:85224003-85224004
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1374411	0.86[AMR][1000 genomes]
rs1374412	0.86[AMR][1000 genomes]
rs1446793	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1867900	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1867901	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2100084	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3099513	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4075134	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4605042	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4885929	0.98[AFR][1000 genomes]
rs55875665	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs67116577	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67564213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67648125	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67944185	0.92[AFR][1000 genomes]
rs72629434	0.86[EUR][1000 genomes]
rs7322072	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7322166	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs977180	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900691	chr13:85206473-85294881	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1851778	chr13:85206473-85299207	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900692	chr13:85218788-85294881	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85219200-85225200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:85219800-85227600	Weak transcription	Right Ventricle	heart
3	chr13:85219800-85229800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:85220000-85225400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:85220200-85225600	Weak transcription	Left Ventricle	heart
6	chr13:85220400-85228200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr13:85221200-85224200	Weak transcription	Osteobl	bone
8	chr13:85221400-85227800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:85223400-85226000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:85223600-85224600	Enhancers	Hela-S3	cervix
11	chr13:85223600-85225200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:85223600-85228600	Enhancers	Fetal Heart	heart
13	chr13:85223600-85229400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr13:85223800-85224200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:85223800-85224600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:85224000-85224400	Enhancers	NH-A	brain
17	chr13:85224000-85224400	Enhancers	NHEK	skin
18	chr13:85224000-85224600	Enhancers	HMEC	breast
19	chr13:85224000-85225200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:85224000-85225200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:85224000-85226000	Enhancers	Muscle Satellite Cultured Cells	--

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