Variant report

Variant	rs72632994
Chromosome Location	chr11:17796471-17796472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17792903..17795891-chr11:17796035..17799923,4	K562	blood:
2	chr11:17790395..17791963-chr11:17795616..17797848,2	K562	blood:
3	chr11:17794271..17797051-chr11:17798441..17802132,3	K562	blood:
4	chr11:17789104..17793559-chr11:17796092..17800270,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYOD1-2	chr11:17795943-17799369	NONHSAT018246

Variant related genes	Relation type
ENSG00000129159	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72632993	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467718	chr11:17744992-17809724	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv553589	chr11:17744992-17809724	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv516767	chr11:17758587-17809724	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17787800-17801400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:17788000-17811400	Weak transcription	Brain Anterior Caudate	brain
3	chr11:17788400-17802000	Weak transcription	Fetal Brain Male	brain
4	chr11:17792000-17796800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:17792000-17815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:17792000-17818400	Weak transcription	Right Atrium	heart
7	chr11:17792200-17803200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:17792600-17798400	Strong transcription	Fetal Brain Female	brain
9	chr11:17793000-17796800	Strong transcription	Brain Germinal Matrix	brain
10	chr11:17793200-17809800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:17795200-17796800	Enhancers	HepG2	liver
12	chr11:17795200-17797800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:17795200-17801400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:17795400-17797800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:17795400-17803600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:17796200-17797000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:17796200-17797400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:17796200-17797800	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:17796200-17802400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:17796200-17803200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:17796400-17796600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:17796400-17797200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links