Variant report

Variant	rs72633562
Chromosome Location	chr8:35178239-35178240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10104759	0.81[ASN][1000 genomes]
rs17341507	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56031800	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56198320	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72633596	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72633597	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72634916	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72634917	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35162000-35178600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:35177200-35178400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:35177400-35179600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:35177600-35179800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:35178000-35180400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:35178200-35179400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:35178200-35179600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:35178200-35179800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:35178200-35180400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:35178200-35181200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:35178200-35182400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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