Variant report

Variant	rs72637388
Chromosome Location	chr17:16999288-16999289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16983913..16986213-chr17:16997467..16999480,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72637387	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv960194	chr17:16992376-17000025	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
2	chr17:16988000-16999800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:16988200-17000000	Weak transcription	Fetal Kidney	kidney
4	chr17:16988800-17000600	Weak transcription	Aorta	Aorta
5	chr17:16991000-17000200	Weak transcription	GM12878-XiMat	blood
6	chr17:16991600-17000200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr17:16992200-16999400	Weak transcription	NH-A	brain
8	chr17:16992200-16999600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr17:16992400-17000200	Weak transcription	Hela-S3	cervix
10	chr17:16992400-17010000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:16992600-17000000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr17:16992800-16999800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr17:16993000-17000600	Strong transcription	Primary T cells from cord blood	blood
14	chr17:16993200-17003800	Genic enhancers	Fetal Intestine Small	intestine
15	chr17:16993400-17000200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:16993400-17011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr17:16994400-16999600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:16994600-17003400	Enhancers	Ovary	ovary
19	chr17:16994600-17011600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr17:16995000-16999400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr17:16995200-17001000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr17:16995400-17001600	Weak transcription	Brain Germinal Matrix	brain
23	chr17:16995400-17002400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr17:16995800-16999600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr17:16995800-16999600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr17:16996000-16999400	Weak transcription	Esophagus	oesophagus
27	chr17:16996000-17001000	Weak transcription	Fetal Brain Female	brain
28	chr17:16996400-16999800	Weak transcription	Primary B cells from cord blood	blood
29	chr17:16996400-17006200	Weak transcription	Liver	Liver
30	chr17:16996800-16999400	Weak transcription	Fetal Brain Male	brain
31	chr17:16996800-17000200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr17:16997000-17000400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr17:16997000-17016600	Enhancers	Left Ventricle	heart
34	chr17:16997200-16999800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr17:16997200-17005000	Weak transcription	K562	blood
36	chr17:16997400-16999400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr17:16997400-16999400	Weak transcription	NHLF	lung
38	chr17:16997400-16999600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr17:16997400-17006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr17:16997400-17010000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr17:16997600-16999400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:16997600-16999400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr17:16997600-16999400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr17:16997600-16999400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr17:16997800-16999800	Weak transcription	Colon Smooth Muscle	Colon
46	chr17:16998000-17000400	Enhancers	H1 Cell Line	embryonic stem cell
47	chr17:16998000-17000400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr17:16998000-17000400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr17:16998000-17001000	Strong transcription	Fetal Thymus	thymus
50	chr17:16998000-17001200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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