Variant report

Variant	rs72638191
Chromosome Location	chr11:33642818-33642819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3818052	1.00[AMR][1000 genomes]
rs72638190	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33594600-33644000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:33627200-33643400	Weak transcription	HSMMtube	muscle
3	chr11:33633800-33652400	Weak transcription	Fetal Brain Female	brain
4	chr11:33634600-33643800	Weak transcription	HUVEC	blood vessel
5	chr11:33635000-33644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:33638800-33644800	Enhancers	HMEC	breast
7	chr11:33639000-33643000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:33640600-33666400	Weak transcription	Brain Germinal Matrix	brain
9	chr11:33640800-33645400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:33640800-33673600	Weak transcription	Fetal Brain Male	brain
11	chr11:33641000-33644400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:33641200-33644400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:33641400-33643000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:33641400-33643000	Enhancers	Brain Angular Gyrus	brain
15	chr11:33641400-33645000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:33641600-33643000	Enhancers	Brain Anterior Caudate	brain
17	chr11:33641600-33643600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:33641600-33644200	Enhancers	NHDF-Ad	bronchial
19	chr11:33641600-33644400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:33641800-33643000	Enhancers	Brain Hippocampus Middle	brain
21	chr11:33641800-33644600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:33642000-33643000	Enhancers	Adipose Nuclei	Adipose
23	chr11:33642000-33643400	Enhancers	Brain Substantia Nigra	brain
24	chr11:33642000-33644400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:33642000-33644400	Enhancers	NH-A	brain
26	chr11:33642000-33644600	Enhancers	Osteobl	bone
27	chr11:33642400-33643800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:33642400-33644400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:33642400-33644400	Enhancers	NHLF	lung
30	chr11:33642400-33644800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:33642600-33644400	Enhancers	HSMM	muscle
32	chr11:33642600-33644600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr11:33642600-33673600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:33642800-33643000	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr11:33642800-33643000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:33642800-33643200	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:33642800-33645600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:33642800-33657400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links