Variant report

Variant	rs72639163
Chromosome Location	chr11:83607083-83607084
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34540949	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57457735	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83606200-83608800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:83606400-83607200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:83606400-83607200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:83606400-83607200	Enhancers	Fetal Heart	heart
5	chr11:83606400-83608400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83606600-83607200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:83606600-83607400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:83606600-83607600	Enhancers	Brain Anterior Caudate	brain
9	chr11:83606600-83607800	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:83606800-83607200	Enhancers	Brain Angular Gyrus	brain
11	chr11:83606800-83607200	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr11:83606800-83607400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:83606800-83608400	Enhancers	Brain Substantia Nigra	brain
14	chr11:83607000-83608000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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