Variant report

Variant	rs72639766
Chromosome Location	chr8:52886240-52886241
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC090186.1-2	chr8:52886163-52886295	NONHSAT126546

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10106934	0.94[EUR][1000 genomes]
rs1040142	0.86[EUR][1000 genomes]
rs17285320	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28593239	0.92[EUR][1000 genomes]
rs28733420	0.94[EUR][1000 genomes]
rs58991163	0.83[EUR][1000 genomes]
rs60882754	0.96[EUR][1000 genomes]
rs61629846	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1031672	chr8:52872448-52917469	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020673	chr8:52878946-52917469	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52885400-52886400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:52885800-52887000	Active TSS	Fetal Intestine Large	intestine
3	chr8:52886000-52886400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:52886000-52886400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:52886000-52886400	Enhancers	Primary T cells from cord blood	blood
6	chr8:52886000-52886400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:52886000-52886400	Enhancers	Liver	Liver
8	chr8:52886000-52886600	Active TSS	Fetal Intestine Small	intestine
9	chr8:52886000-52886600	Enhancers	Ovary	ovary
10	chr8:52886000-52886600	Enhancers	Stomach Mucosa	stomach
11	chr8:52886000-52886600	Enhancers	Dnd41	blood
12	chr8:52886000-52886800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:52886000-52886800	Enhancers	Fetal Lung	lung
14	chr8:52886000-52886800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr8:52886000-52886800	Flanking Active TSS	HepG2	liver
16	chr8:52886000-52886800	Enhancers	HUVEC	blood vessel
17	chr8:52886200-52886400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:52886200-52886400	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr8:52886200-52886600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr8:52886200-52886600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:52886200-52886600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:52886200-52886600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:52886200-52886600	Enhancers	Adipose Nuclei	Adipose
24	chr8:52886200-52886600	Active TSS	Brain Anterior Caudate	brain
25	chr8:52886200-52886600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr8:52886200-52886600	Enhancers	Esophagus	oesophagus
27	chr8:52886200-52886600	Flanking Active TSS	Fetal Kidney	kidney
28	chr8:52886200-52886600	Enhancers	Fetal Muscle Leg	muscle
29	chr8:52886200-52886600	Enhancers	Fetal Stomach	stomach
30	chr8:52886200-52886600	Flanking Active TSS	Pancreas	Pancrea
31	chr8:52886200-52886600	Enhancers	Psoas Muscle	Psoas
32	chr8:52886200-52886600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr8:52886200-52886600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr8:52886200-52886600	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr8:52886200-52886800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:52886200-52886800	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr8:52886200-52886800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr8:52886200-52886800	Active TSS	Rectal Smooth Muscle	rectum
39	chr8:52886200-52886800	Enhancers	Small Intestine	intestine

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