Variant report

Variant	rs72641169
Chromosome Location	chr1:76736456-76736457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11809814	1.00[EUR][1000 genomes]
rs4147008	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76726400-76740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:76727400-76744800	Weak transcription	Aorta	Aorta
3	chr1:76731800-76736600	Enhancers	Fetal Thymus	thymus
4	chr1:76732000-76737000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:76732000-76737600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:76732200-76737000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:76733000-76737000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:76733800-76736600	Enhancers	Fetal Muscle Leg	muscle
9	chr1:76733800-76736800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:76734000-76736600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr1:76734000-76736600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr1:76734000-76737000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:76734000-76737400	Weak transcription	Primary B cells from cord blood	blood
14	chr1:76734400-76737000	Enhancers	Adipose Nuclei	Adipose
15	chr1:76734600-76737600	Enhancers	Primary T cells from cord blood	blood
16	chr1:76735000-76737000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:76735000-76737200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:76735000-76740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:76735000-76743400	Weak transcription	Fetal Kidney	kidney
20	chr1:76735200-76744600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:76735200-76745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:76735400-76736600	Enhancers	GM12878-XiMat	blood
23	chr1:76735400-76744200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:76735600-76736600	Weak transcription	Brain Anterior Caudate	brain
25	chr1:76735600-76739600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:76735600-76740000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:76735600-76750600	Weak transcription	Left Ventricle	heart
28	chr1:76736200-76736600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:76736200-76736600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr1:76736200-76736600	Enhancers	Psoas Muscle	Psoas
31	chr1:76736200-76736600	Enhancers	Right Atrium	heart
32	chr1:76736200-76736800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr1:76736200-76736800	Enhancers	Small Intestine	intestine
34	chr1:76736400-76736600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:76736400-76736600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr1:76736400-76736600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr1:76736400-76736600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:76736400-76736600	Enhancers	Brain Hippocampus Middle	brain
39	chr1:76736400-76736800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr1:76736400-76744400	Weak transcription	Brain Cingulate Gyrus	brain

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