Variant report

Variant	rs72641216
Chromosome Location	chr4:63075798-63075799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10014304	1.00[ASN][1000 genomes]
rs10517557	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10517558	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11131360	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13108646	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13109058	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111304	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13118308	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123239	1.00[ASN][1000 genomes]
rs13125037	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13125062	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131100	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13143865	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149735	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1350649	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17828666	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1870528	1.00[ASN][1000 genomes]
rs33932625	1.00[ASN][1000 genomes]
rs34348454	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34978365	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4860455	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4860459	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56150500	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62306419	1.00[ASN][1000 genomes]
rs67529975	1.00[ASN][1000 genomes]
rs6841045	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9994443	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013327	chr4:62989426-63149048	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1012093	chr4:63014592-63568580	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537113	chr4:63014592-63568580	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv534618	chr4:63025655-63568620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv997505	chr4:63025663-63575696	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv594333	chr4:63025823-63467034	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv461378	chr4:63037324-63158560	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv594334	chr4:63037324-63158560	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	nsv1013850	chr4:63049885-63568580	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv537114	chr4:63049885-63568580	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv594335	chr4:63054757-63183246	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv879079	chr4:63059672-63184850	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv980448	chr4:63069447-63076690	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv594336	chr4:63075414-63183246	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:63074400-63075800	Enhancers	Fetal Muscle Leg	muscle
2	chr4:63075200-63076000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:63075200-63076000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:63075400-63075800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:63075400-63075800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:63075400-63076000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:63075400-63076600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:63075600-63075800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:63075600-63075800	Enhancers	Right Ventricle	heart
10	chr4:63075600-63076000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:63075600-63076000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:63075600-63076000	Enhancers	Fetal Heart	heart
13	chr4:63075600-63076200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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