Variant report

Variant	rs72642435
Chromosome Location	chr18:43583314-43583315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43578639..43580570-chr18:43582338..43584371,2	MCF-7	breast:
2	chr18:43577618..43580480-chr18:43580513..43583485,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10468858	0.84[ASN][1000 genomes]
rs10468859	0.83[ASN][1000 genomes]
rs10468860	0.94[ASN][1000 genomes]
rs10468978	0.82[ASN][1000 genomes]
rs10468980	0.84[ASN][1000 genomes]
rs16978508	0.97[ASN][1000 genomes]
rs16978509	0.97[ASN][1000 genomes]
rs16978517	0.83[ASN][1000 genomes]
rs1837213	0.94[ASN][1000 genomes]
rs486424	0.94[ASN][1000 genomes]
rs488431	0.96[ASN][1000 genomes]
rs4890612	0.97[ASN][1000 genomes]
rs4890613	0.87[ASN][1000 genomes]
rs55966192	0.96[ASN][1000 genomes]
rs567504	0.90[ASN][1000 genomes]
rs568448	0.94[ASN][1000 genomes]
rs57141604	0.85[ASN][1000 genomes]
rs593664	0.92[ASN][1000 genomes]
rs596415	0.96[ASN][1000 genomes]
rs6507659	0.96[ASN][1000 genomes]
rs6507661	0.84[ASN][1000 genomes]
rs687526	0.96[ASN][1000 genomes]
rs688547	0.95[ASN][1000 genomes]
rs7237813	0.89[ASN][1000 genomes]
rs9675392	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2277	chr18:43543715-43588579	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1064882	chr18:43558343-43687674	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv543693	chr18:43558343-43687674	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43558800-43608000	Weak transcription	Pancreas	Pancrea
2	chr18:43560400-43597600	Weak transcription	Left Ventricle	heart
3	chr18:43560600-43591600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr18:43562600-43585600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:43563400-43592000	Weak transcription	Psoas Muscle	Psoas
6	chr18:43565400-43588800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr18:43565400-43590800	Weak transcription	Colon Smooth Muscle	Colon
8	chr18:43565600-43588800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr18:43567800-43588800	Weak transcription	NHEK	skin
10	chr18:43568600-43596800	Weak transcription	Adipose Nuclei	Adipose
11	chr18:43568800-43588600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr18:43568800-43607800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr18:43569400-43588800	Weak transcription	Fetal Stomach	stomach
14	chr18:43570200-43588800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr18:43571400-43622000	Weak transcription	Gastric	stomach
16	chr18:43574200-43590000	Weak transcription	HMEC	breast
17	chr18:43574200-43592000	Weak transcription	NH-A	brain
18	chr18:43574200-43593200	Weak transcription	NHDF-Ad	bronchial
19	chr18:43574200-43597400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr18:43574200-43608000	Weak transcription	NHLF	lung
21	chr18:43574600-43608000	Weak transcription	Osteobl	bone
22	chr18:43576000-43585800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr18:43576600-43588800	Weak transcription	Ovary	ovary
24	chr18:43577000-43589600	Weak transcription	Liver	Liver
25	chr18:43578600-43587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr18:43579000-43587200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr18:43579000-43588600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr18:43579200-43587200	Weak transcription	Spleen	Spleen
29	chr18:43579600-43587400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr18:43579800-43589400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr18:43580000-43592600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr18:43580600-43587800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr18:43581400-43590200	Weak transcription	Primary T cells from cord blood	blood
34	chr18:43581400-43590600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr18:43581600-43589400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr18:43582000-43583400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr18:43582000-43583400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
38	chr18:43582000-43583400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr18:43582000-43583400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
40	chr18:43582000-43583600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr18:43582200-43583400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr18:43582200-43583800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr18:43582200-43592600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr18:43582400-43588600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr18:43582600-43583400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr18:43582600-43583400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr18:43582600-43583400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
48	chr18:43582600-43583400	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr18:43582600-43583600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr18:43582600-43585400	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links