Variant report

Variant	rs72642861
Chromosome Location	chr8:39695859-39695860
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:39695848-39695898	HNPCEpiC	eye:	n/a
2	chr8:39695848-39695898	HRCEpiC	kidney:	n/a
3	chr8:39695848-39695898	PrEC	prostate:	n/a
4	chr8:39695848-39695898	HCPEpiC	choroid plexus:	n/a
5	chr8:39695848-39695898	GM12892	blood:	n/a
6	chr8:39695848-39695898	NHDF-neo	bronchial:	n/a
7	chr8:39695848-39695898	Caco-2	colon:	n/a
8	chr8:39695848-39695898	SK-N-MC	brain:	n/a
9	chr8:39695848-39695898	SK-N-SH_RA	brain:	n/a
10	chr8:39695848-39695898	IMR90	lung:	fetal
11	chr8:39695848-39695898	MCF-7	breast:	n/a
12	chr8:39695848-39695898	SKMC	muscle:	n/a
13	chr8:39695848-39695898	AG04449	skin:	fetal
14	chr8:39695848-39695898	HRPEpiC	eye:	n/a
15	chr8:39695848-39695898	HRE	kidney:	n/a
16	chr8:39695848-39695898	Hepatocyte	liver:	n/a
17	chr8:39695848-39695898	RPTEC	kidney:	n/a
18	chr8:39695848-39695898	U87	brain:	n/a
19	chr8:39695848-39695898	NT2-D1	testis:	n/a
20	chr8:39695848-39695898	GM12891	blood:	n/a
21	chr8:39695848-39695898	HAEpiC	amniotic membrane:	n/a
22	chr8:39695848-39695898	HMEC	breast:	n/a
23	chr8:39695848-39695898	HCF	heart:	n/a
24	chr8:39695848-39695898	SK-N-SH	brain:	n/a
25	chr8:39695848-39695898	AG04450	lung:	fetal
26	chr8:39695848-39695898	GM06990	blood:	n/a
27	chr8:39695848-39695898	GM12878	blood:	n/a
28	chr8:39695848-39695898	HPAEpiC	pulmonary alveolar:	n/a
29	chr8:39695848-39695898	Jurkat	blood:	n/a
30	chr8:39695848-39695898	HUVEC	blood vessel:	n/a
31	chr8:39695848-39695898	NB4	blood:	n/a
32	chr8:39695848-39695898	ECC-1	luminal epithelium:	n/a
33	chr8:39695848-39695898	HL-60	blood:	n/a
34	chr8:39695848-39695898	ovcar-3	ovarian:	n/a
35	chr8:39695848-39695898	BJ	skin:	n/a
36	chr8:39695848-39695898	HEK293	kidney:	embryo
37	chr8:39695848-39695898	PFSK-1	brain:	n/a
38	chr8:39695848-39695898	GM19239	blood:	n/a
39	chr8:39695848-39695898	CMK	blood:	n/a
40	chr8:39695848-39695898	H1-hESC	embryonic stem cell:	embryo
41	chr8:39695848-39695898	SAEC	small airway:	n/a
42	chr8:39695848-39695898	HEEpiC	esophagus:	n/a
43	chr8:39695848-39695898	AG10803	skin:	n/a
44	chr8:39695848-39695898	AG09319	gingival:	n/a
45	chr8:39695848-39695898	NHBE	bronchial:	n/a
46	chr8:39695848-39695898	T-47D	breast:	n/a
47	chr8:39695848-39695898	ProgFib	skin:	n/a
48	chr8:39695848-39695898	BE2_C	brain:	n/a
49	chr8:39695848-39695898	AoSMC	blood vessel:	n/a
50	chr8:39695848-39695898	AG09309	skin:	n/a

No data

Variant related genes	Relation type
ADAM2	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10096637	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511247	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62511257	0.81[AMR][1000 genomes]
rs72642874	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72642876	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72642877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39695600-39696000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links