Variant report

Variant	rs72643637
Chromosome Location	chr13:95828021-95828022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95827296..95830102-chr13:95830426..95833781,3	K562	blood:
2	chr13:95821172..95824046-chr13:95827548..95829686,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1479389	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17189376	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34295536	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:95756400-95828200	Weak transcription	HSMM	muscle
3	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
4	chr13:95799200-95833400	Weak transcription	HSMMtube	muscle
5	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
6	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
7	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
9	chr13:95807400-95837800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr13:95807600-95829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:95808200-95841800	Weak transcription	Osteobl	bone
12	chr13:95808400-95833400	Weak transcription	Fetal Kidney	kidney
13	chr13:95808400-95854600	Weak transcription	NHEK	skin
14	chr13:95809000-95829200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr13:95810400-95829000	Weak transcription	Adipose Nuclei	Adipose
16	chr13:95810400-95836200	Weak transcription	Fetal Thymus	thymus
17	chr13:95810400-95836400	Weak transcription	Thymus	Thymus
18	chr13:95812400-95831400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr13:95812800-95833400	Weak transcription	Pancreas	Pancrea
20	chr13:95813200-95858000	Weak transcription	Aorta	Aorta
21	chr13:95814600-95832400	Weak transcription	HepG2	liver
22	chr13:95814800-95831200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr13:95814800-95833400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:95815000-95844200	Weak transcription	Fetal Muscle Leg	muscle
25	chr13:95815200-95847800	Weak transcription	Hela-S3	cervix
26	chr13:95817000-95830000	Weak transcription	Small Intestine	intestine
27	chr13:95817200-95833400	Weak transcription	Psoas Muscle	Psoas
28	chr13:95817400-95828400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr13:95817400-95832800	Weak transcription	Stomach Mucosa	stomach
30	chr13:95818000-95829200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr13:95818200-95841800	Weak transcription	NHDF-Ad	bronchial
32	chr13:95818600-95830000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:95822000-95828600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr13:95822000-95829800	Weak transcription	Ovary	ovary
35	chr13:95822000-95834600	Weak transcription	Fetal Stomach	stomach
36	chr13:95822000-95837000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr13:95822200-95828200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr13:95823200-95828200	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr13:95823600-95844400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr13:95823800-95829000	Weak transcription	Fetal Intestine Large	intestine
41	chr13:95824000-95830800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr13:95824400-95833400	Weak transcription	Left Ventricle	heart
43	chr13:95824600-95831000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr13:95824600-95840000	Weak transcription	Fetal Lung	lung
45	chr13:95824800-95831400	Strong transcription	A549	lung
46	chr13:95825000-95828200	Strong transcription	GM12878-XiMat	blood
47	chr13:95825000-95829000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr13:95825000-95831000	Strong transcription	Fetal Intestine Small	intestine
49	chr13:95825200-95830400	Strong transcription	Lung	lung
50	chr13:95825200-95830800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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