Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494693	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12404012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12404689	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1442428	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1899429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473356	1.00[EUR][1000 genomes]
rs34125568	0.96[ASN][1000 genomes]
rs34359572	0.96[ASN][1000 genomes]
rs35314445	0.95[AFR][1000 genomes]
rs58006978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58271974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680781	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72644117	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72644119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72644120	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72644121	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72644122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72644123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72644124	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7515665	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194009000-194013000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:194009200-194013800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:194009400-194013000	Weak transcription	NHEK	skin
4	chr1:194009400-194013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:194010000-194013200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:194010200-194013600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:194010200-194013600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:194010200-194014000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:194010200-194020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:194010600-194012800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:194010600-194013200	Weak transcription	Primary T cells from cord blood	blood
12	chr1:194010600-194013200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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