Variant report

Variant	rs72644134
Chromosome Location	chr1:195065309-195065310
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10921798	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12062979	0.93[ASN][1000 genomes]
rs12067785	1.00[ASN][1000 genomes]
rs12119697	1.00[ASN][1000 genomes]
rs12122218	1.00[ASN][1000 genomes]
rs1411815	0.94[ASN][1000 genomes]
rs1490372	0.94[ASN][1000 genomes]
rs1490380	0.84[ASN][1000 genomes]
rs1831473	0.97[ASN][1000 genomes]
rs2171976	0.98[ASN][1000 genomes]
rs2776714	0.94[ASN][1000 genomes]
rs34211132	1.00[ASN][1000 genomes]
rs34222189	1.00[ASN][1000 genomes]
rs35236785	0.99[ASN][1000 genomes]
rs35459023	0.93[ASN][1000 genomes]
rs6659779	0.88[ASN][1000 genomes]
rs6659796	0.90[ASN][1000 genomes]
rs6659807	0.90[ASN][1000 genomes]
rs6660251	0.92[ASN][1000 genomes]
rs6664187	1.00[ASN][1000 genomes]
rs6664586	1.00[ASN][1000 genomes]
rs6664589	0.99[ASN][1000 genomes]
rs6675199	0.98[ASN][1000 genomes]
rs6675672	1.00[ASN][1000 genomes]
rs6683390	0.86[ASN][1000 genomes]
rs66948807	1.00[ASN][1000 genomes]
rs67163248	0.88[ASN][1000 genomes]
rs696393	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs698044	0.93[ASN][1000 genomes]
rs73071846	0.96[ASN][1000 genomes]
rs7511889	1.00[ASN][1000 genomes]
rs7518089	0.88[ASN][1000 genomes]
rs7518103	1.00[ASN][1000 genomes]
rs7519295	1.00[ASN][1000 genomes]
rs7521806	1.00[ASN][1000 genomes]
rs7526195	0.96[ASN][1000 genomes]
rs7549038	0.97[ASN][1000 genomes]
rs7549422	0.97[ASN][1000 genomes]
rs7549617	1.00[ASN][1000 genomes]
rs7553603	1.00[ASN][1000 genomes]
rs822455	0.94[ASN][1000 genomes]
rs822458	0.94[ASN][1000 genomes]
rs822459	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014879	chr1:194418509-195274182	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1011220	chr1:194434255-195276317	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv548699	chr1:194777806-195202201	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv533460	chr1:194779033-195627237	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv832215	chr1:194902968-195106134	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1000161	chr1:194918245-195340203	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv872893	chr1:194996485-195103653	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv548703	chr1:195031417-195202201	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv467160	chr1:195042377-195094980	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv548704	chr1:195042377-195094980	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2421573	chr1:195052602-195072917	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	esv2762209	chr1:195052602-195072917	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv872895	chr1:195053377-195107223	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv872896	chr1:195058871-195164692	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv872897	chr1:195058871-195335517	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv872898	chr1:195058871-195476697	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195063000-195065400	Weak transcription	Right Atrium	heart
2	chr1:195064000-195066200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:195065200-195065600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:195065200-195065600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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