Variant report

Variant	rs72645710
Chromosome Location	chr7:50494004-50494005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11575372	0.93[ASN][1000 genomes]
rs11575383	0.97[ASN][1000 genomes]
rs11575387	0.97[ASN][1000 genomes]
rs11575388	1.00[ASN][1000 genomes]
rs11575422	0.90[ASN][1000 genomes]
rs11575431	1.00[ASN][1000 genomes]
rs11575434	0.97[ASN][1000 genomes]
rs11575441	1.00[ASN][1000 genomes]
rs11575450	1.00[ASN][1000 genomes]
rs17133853	0.93[ASN][1000 genomes]
rs17152014	1.00[ASN][1000 genomes]
rs58024888	1.00[ASN][1000 genomes]
rs58085392	0.97[ASN][1000 genomes]
rs6951648	0.85[ASN][1000 genomes]
rs7791875	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515738	chr7:50476109-50494207	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:50486600-50495000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:50493400-50505800	Weak transcription	Thymus	Thymus
4	chr7:50494000-50494600	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr7:50494000-50495200	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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